hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia05043/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1027  ( 2564 res)   mia05043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ILWEQ    I/LWEQ domain                                  361.2   6.3e-104   1
B41      Band 4.1 homologues                            257.9    8.2e-73   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1     105   336 ..     1   232 []   257.9  8.2e-73
ILWEQ      1/1    2359  2556 ..     1   207 []   361.2 6.3e-104

Alignments of top-scoring domains:
B41: domain 1 of 1, from 105 to 336: score 257.9, E = 8.2e-73
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      ++k+r lk+++ldgt++++ vd s t+ ++l+t+c ++g+  +++++
   mKIAA1027   105    RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDE 149  

                   FgLqfedkded.................................shWldp
                   ++L++e + e++++++++ +++++  +++++ ++ +++ +++++  Wld+
   mKIAA1027   150 YSLVRELMEEKkdegtgtlrkdktllrdekkmeklkqklhtddeLNWLDH 199  

                   aktilkqdvkspksepltlyFRvkFyppdwhgppeqlkeDptrynllylQ
                    +t+++q+v+    e++tl++R+kF+++d    +++ ++Dp+++nlly+Q
   mKIAA1027   200 GRTLREQGVE----EHETLLLRRKFFYSD----QNVDSRDPVQLNLLYVQ 241  

                   vrddilsGrlpcpseeeallLAaLalqaefGdydpeeeekkkslkhvake
                   +rddil+G +p++ +++a ++A +++q++fG ++++        kh+a++
   mKIAA1027   242 ARDDILNGSHPVS-FDKACEFAGFQCQIQFGPHNEQ--------KHKAGF 282  

                   lslkrflPkqlldsikasflqiqltlkewrerIvelhkehaglspeeakl
                   l+lk+flPk + +             ++ +++I+++hk++ ++s+ eak+
   mKIAA1027   283 LDLKDFLPKEYVK-------------QKGERKIFQAHKNCGQMSEIEAKV 319  

                   kYLelarrLpptYGvelF<-*
                   +Y++lar+L  tYGv +F   
   mKIAA1027   320 RYVKLARSLK-TYGVSFF    336  

ILWEQ: domain 1 of 1, from 2359 to 2556: score 361.2, E = 6.3e-104
                   *->gveleVdEsILeaAkaItkAiaaLVkAAtnaQrEIVaqGrggaspae
                      +++l+++E+ILeaAk+I++A++aLVkAA++aQrE+VaqG++ga+pa+
   mKIAA1027  2359    DESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIPAN 2405 

                   fYkKnsrWTEGLISAAKAVAaAtnvLveaAdgvvqGkgseEeLIVAakeV
                   +++ +++W++GLISAA++VAaAtn+L+eaA+++vqG++s+E+LI++ak+V
   mKIAA1027  2406 ALD-DGQWSQGLISAARMVAAATNNLCEAANAAVQGHASQEKLISSAKQV 2454 

                   AASTAQLVaASRVKAdkdSqSqAaqdrLeaAskaVtnAtanLVaavksva
                   AASTAQL++A++VKAd+dS+   a++rL+aA++aV++A++nLV+a++++a
   mKIAA1027  2455 AASTAQLLVACKVKADQDSE---AMKRLQAAGNAVKRASDNLVKAAQKAA 2501 

                   ieddeetieqeqelDfskLslhegKtqEMEqQVeILKLEkeLeaARkkLa
                   ++     ++qe+e++++k+++++g++q++++Q+e+L++E+eLe+ARkk a
   mKIAA1027  2502 AF-----EDQENETVVVKEKMVGGIAQIIAAQEEMLRKERELEEARKKFA 2546 

                   eiRKqeYkla<-*
                   +iR+q+Yk+    
   mKIAA1027  2547 QIRQQQYKFL    2556 

//