hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mia/mia05043/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1027 ( 2564 res) mia05043 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Band_41 FERM domain (Band 4.1 family) 379.6 3.2e-110 1 I_LWEQ I/LWEQ domain 369.4 3.8e-107 1 ACBP Acyl CoA binding protein -41.7 0.77 1 Phage_CP76 Phage regulatory protein CII (CP76) -46.0 0.79 1 Apolipoprotein Apolipoprotein A1/A4/E family -101.6 0.46 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ACBP 1/1 251 332 .. 1 89 [] -41.7 0.77 Band_41 1/1 144 336 .. 1 210 [] 379.6 3.2e-110 Apolipoprotein 1/1 980 1231 .. 1 277 [] -101.6 0.46 Phage_CP76 1/1 1875 2011 .. 1 166 [] -46.0 0.79 I_LWEQ 1/1 2364 2556 .. 1 202 [] 369.4 3.8e-107 Alignments of top-scoring domains: ACBP: domain 1 of 1, from 251 to 332: score -41.7, E = 0.77 *->lqedFeaAaekvkkLkknGpvkPSneekLkLYsLYKQATvGDvnter + ++F++A+e + + P ne+k + mKIAA1027 251 HPVSFDKACEFAGFQCQI-QFGPHNEQK-----------------HK 279 PGmfDlk............grAKWDAWnelkGmSkeeAmkaYIakVeeLi G++Dlk+ +++ +++++r+ + A ++ + mS+ eA+ +Y+++ +L mKIAA1027 280 AGFLDLKdflpkeyvkqkgERKIFQAHKNCGQMSEIEAKVRYVKLARSL- 328 akya<-* ++y+ mKIAA1027 329 KTYG 332 Band_41: domain 1 of 1, from 144 to 336: score 379.6, E = 3.2e-110 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +t+++++s+v+e+++eKkd+G+++L+k++++L++++k+++++Q+l+ mKIAA1027 144 ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH- 189 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT ++d+++WLd+++++r+Q ++ee++tL++R+KF+++D+++++r++++ mKIAA1027 190 ---TDDELNWLDHGRTLREQ--GVEEHETLLLRRKFFYSDQNVDSRDPVQ 234 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ++l+++Q+++dIl+G++p++f++A+++A++++Q++fG++ne++HkaG mKIAA1027 235 LNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAG--- 281 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk +L+++++lP k+++k+++E+kI+++Hk++++ms++eA+++Y+k mKIAA1027 282 --FLDLKDFLP------KEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVK 323 iArdLemYGVdff<-* +Ar+L++YGV+ff mKIAA1027 324 LARSLKTYGVSFF 336 Apolipoprotein: domain 1 of 1, from 980 to 1231: score -101.6, E = 0.46 *->Kalv..laLalllLtGcqArsfwQadePEvteqaWqqsqwdqvkd.. Ka++++ L++ + G+qA+ d P + q+ ++++ mKIAA1027 980 KAVAeqIPLLVQGVRGSQAQ----PDSP--------SAQLALIAAsq 1014 .rfw...vYlrqVkdssdqaveqLessqvtqeLnllLednldelksyaee +++ +++ +++ k s ++q + q+ + +L l+el + a++ mKIAA1027 1015 sFLQpggKMVAAAKASVPTIQDQASAMQL-SQCAKNLGTALAELRTAAQK 1063 LqeqLgPv....aqefqarLsKetqalraelgkDlEdvrn.rlaPyrdEv qe gP + ++a ++ +L+K++q+ +a +r+++l P +E mKIAA1027 1064 AQEACGPLemdsALSVVQNLEKDLQEIKA-------AARDgKLKPLPGET 1106 qamlgqnleeyRqrLePlareLrkrlrrdaeeLqkrLaPyaeelReraer ++ +q+l + +++ +++L + a++ a mKIAA1027 1107 MEKCTQDLGNSTKAVSSAIAKLLGEI--------------AQGNENYAGI 1142 nVdalrerLgPyvEqlRqkaAtlltqrleeL.rEraqpyaeEykeqleeq + + L++++ +R aA + +++++ + a +++ + +ee+ mKIAA1027 1143 AARDVAGGLRSLAQAARGVAALTSDPAVQAIvLDTASDVLDKASSLIEEA 1192 lselReklapvredlqevltpvlEqaQlklqaeafqeelkkkle<-* ++ + p + q++l+ v+ +++ +++ l + mKIAA1027 1193 KKASGH---PGDPESQQRLAQVAKA--VTQALNRCVSCLPGQRD 1231 Phage_CP76: domain 1 of 1, from 1875 to 2011: score -46.0, E = 0.79 *->DfqvsKqkayneaCraFavrhNmaqLAeRaGmnvqsLRNkLNPeQPH D+q m++ A+ + vq k N mKIAA1027 1875 DYQTT-----------------MVRTAKAIAVTVQEMVTKSN----- 1899 kLsppELvLLt.klsgDsTiVnglLaqigvvpchvppnetakkkLreyVm sp EL L + l+ D+ l +q ++ + ne ++++V+ mKIAA1027 1900 -TSPEELGPLAnQLTSDYG---RLASQAKPAAV-AAENEEIGAHIKHRVQ 1944 nAtYsselGrlA..sdAvqmCskerLtrarKrkiiasaqsairnlaLlia ++ l ++++A q ++ t K++ i+ a + + + a mKIAA1027 1945 ELG--HGCSALVtkAGALQCSPSDVYT---KKELIECARRVSEKVSHVLA 1989 sLekrlqdvpplisivstvral<-* +L++ + + +++i + s v+++ mKIAA1027 1990 ALQAGNRGTQACITAASAVSGI 2011 I_LWEQ: domain 1 of 1, from 2364 to 2556: score 369.4, E = 3.8e-107 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn ++e+IL+aak+I++A++aLVkAAsaaQrE+vaqG+++a+pa++++ + mKIAA1027 2364 FEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIPANALD-D 2409 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA ++W++GLISAA++V+aAt++L+EAA+++V+ G++s+E+LI++ak+VA mKIAA1027 2410 GQWSQGLISAARMVAAATNNLCEAANAAVQ----GHASQEKLISSAKQVA 2455 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQL++A++VKA D+dS+a ++rLqaA++aV++A++nLV+aa+++a+ mKIAA1027 2456 ASTAQLLVACKVKA--DQDSEA-MKRLQAAGNAVKRASDNLVKAAQKAAA 2502 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq f+ ++++e+++++++++g++aq++++Q+e+L++E+eLeeARkk a++R+q mKIAA1027 2503 FE-DQENETVVVKEKMVGGIAQIIAAQEEMLRKERELEEARKKFAQIRQQ 2551 hYela<-* +Y++ mKIAA1027 2552 QYKFL 2556 //