hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj07295/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1026  ( 808 res)   mfj07295

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            89.4    4.2e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/3     476   544 ..     1    67 []    35.0    1e-05
SAM        2/3     553   621 ..     1    67 []    35.6  6.7e-06
SAM        3/3     642   711 ..     1    67 []    19.3     0.55

Alignments of top-scoring domains:
SAM: domain 1 of 3, from 476 to 544: score 35.0, E = 1e-05
                   *->vs.wspesVaeWLe.sigleqYadnFrkngidgeelllltseedLke
                      +s+w+  +V++WLe  + +++Y+++ ++n  +g+ ll+l++e++ + 
   mKIAA1026   476    MShWKAGTVQAWLEvVMAMPMYVKACAENVKSGKVLLSLSDEDLELG 522  

                   lGitllGhRkkIlsaiqklkeq<-*
                   lG+ +  hR+k+  ai++ ++    
   mKIAA1026   523 LGVCSSLHRRKLRLAIEDYRDA    544  

SAM: domain 2 of 3, from 553 to 621: score 35.6, E = 6.7e-06
                   *->vs.wspesVa.eWLesigleqYadnFrkngidgeelllltseedLke
                      + + + + Va++WL  igl+qY  +F+ + +dg++l +l+ +++ k+
   mKIAA1026   553    AAdLDHHWVAkAWLNDIGLSQYSQAFQNHLVDGRMLNSLMKRDLEKH 599  

                   lGitllGhRkkIlsaiqklkeq<-*
                   l +++  h+  Il +i+ l +    
   mKIAA1026   600 LNVSKKFHQVSILLGIELLYQV    621  

SAM: domain 3 of 3, from 642 to 711: score 19.3, E = 0.55
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt...seedL
                      +  w++  V  W + i+l +Yadn++  g++g+ l+l+ + + e++ 
   mKIAA1026   642    PVvWTNQRVLKWVRDIDLKEYADNLTNSGVHGAVLVLEPtfnAEAMA 688  

                   kelGitllGhRkkIlsaiqklkeq<-*
                   + lGi + G +    +  +++ +    
   mKIAA1026   689 TALGI-PSGKHILRRHLAEEMSTI    711  

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