hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1025  ( 1658 res)   mbg05022

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TRAP_240kDa TRAP240                                    1370.3          0   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TRAP_240kDa   1/1     758  1353 ..     1   680 []  1370.3        0

Alignments of top-scoring domains:
TRAP_240kDa: domain 1 of 1, from 758 to 1353: score 1370.3, E = 0
                   *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis
                      P++Nv+D+SmlsSqD+vRmLlslQP+LQDAiqKKrtg+tw+    ++
   mKIAA1025   758    PHSNVLDTSMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWE----NI 800  

                   ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL
                   ++V+GPLTWqQFHk+AGR++Yg++      EspEPLPIPt+lVGYdk +L
   mKIAA1025   801 QHVQGPLTWQQFHKMAGRGTYGSE------ESPEPLPIPTLLVGYDKEFL 844  

                   evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai
                   ++sPfs+pfW++llLEPY+++RDvaY+V+CP+NEAll+gak+FFRDLSa+
   mKIAA1025   845 TISPFSLPFWERLLLEPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAV 894  

                   YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq
                   YEmCrLGqHkPi+k+LrDGi++VG+++a+kl+++lv+ewf+Q++s +e +
   mKIAA1025   895 YEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTEELVSEWFNQPWSSEESD 944  

                   alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa
                   +++ +lk+YAq+crh+LAPYLA+lqlDS LL pP+         + PPa 
   mKIAA1025   945 NHS-RLKLYAQVCRHHLAPYLATLQLDSGLLMPPK--------HQSPPAE 985  

                   agsgaantefgplass.nSslltvtsGvaisttviqaGsyLkelStssSe
                   a+++a+++++g+l s+++S ++             +aGs+++++S ss  
   mKIAA1025   986 AQGQATPGNAGSLPSNsGSGAP-------------PAGSAFNPTSSSSAN 1022 

                   nnclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFs
                       +       S++S++  P+      ++ +sap++  Q +t+sssGF 
   mKIAA1025  1023 PTTSS-------SSASSG--PP-----GSSAASAPGIT-QMNTTSSSGFG 1057 

                   nkikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPD
                   + ++GQ+++ ++ s +rt+G+    +       Dt pgQS     Q ++D
   mKIAA1025  1058 GGVGGQNPSAGGSSTDRTPGN-VACG-------DTEPGQSCT---QSSQD 1096 

                   viEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFty
                   ++ s+++r+++GIPt+++sa+S+++         PpA+ViYm  v+PFty
   mKIAA1025  1097 GQDSVTERERIGIPTEPDSADSHAY---------PPAVVIYM--VDPFTY 1135 

                   enanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqst
                     a+e+s s+++Wll+L+RCy+EmL+ LP+h+rSs+++qI+pcq++lq++
   mKIAA1025  1136 -TAEEDSSSGNFWLLSLMRCYTEMLDHLPEHMRSSFILQIVPCQYMLQTM 1184 

                   ktenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLk
                   k+e  ++y+Q+lkS+Afs+++QCRRpLpt++++KsLTGFGpaa++E+tLk
   mKIAA1025  1185 KDEH-VFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLK 1233 

                   vpdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlf
                   +p+rPs  pi+LY+pPFiLAP+kdkQte       GetfGea+QkYnVlf
   mKIAA1025  1234 NPERPS--PIQLYSPPFILAPIKDKQTEP------GETFGEASQKYNVLF 1275 

                   vgYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKD
                   vgYCLShDqrWlLA+ctD++GELLEtcv+NIa+P R+R sK+sAR++   
   mKIAA1025  1276 VGYCLSHDQRWLLASCTDLHGELLETCVVNIALPSRSRKSKVSARKV--- 1322 

                   gLqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-*
                   gLqKLWe+   ++G+v+++S+PWRVVIGRlGR+G   
   mKIAA1025  1323 GLQKLWEW---CLGIVQMTSLPWRVVIGRLGRLG    1353 

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