hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj42298/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1024  ( 908 res)   mfj42298

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UPF0258  Uncharacterised protein family (UPF0258)       510.6   1.2e-149   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UPF0258    1/1     750   908 .]     1   159 []   510.6 1.2e-149

Alignments of top-scoring domains:
UPF0258: domain 1 of 1, from 750 to 908: score 510.6, E = 1.2e-149
                   *->KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYPasLKa
                      KDWHRKsKEADRqYDiPPqHRLPKqPKDGFLvEqvFsPHPYP+sLK+
   mKIAA1024   750    KDWHRKSKEADRQYDIPPQHRLPKQPKDGFLVEQVFSPHPYPTSLKG 796  

                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARnaGDKGKLtALDLqtqE
                   HmKsnPLYtDmRLtELAEvKRGqPsWtiEEYARn+GDKGKLtALDLqtqE
   mKIAA1024   797 HMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNSGDKGKLTALDLQTQE 846  

                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALiaAAACtvi
                   sLnPnnLEYWmEDiYtPGYDsLLKRKEAEFRRAKvCKiAALi+AAACtvi
   mKIAA1024   847 SLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALITAAACTVI 896  

                   LvivvPiCtmKs<-*
                   LvivvPiCtmKs   
   mKIAA1024   897 LVIVVPICTMKS    908  

//