hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp08192/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1022  ( 1128 res)   mbp08192

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            92.8    4.2e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1    1062  1128 .]     1    67 []    92.8  4.2e-23

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 1062 to 1128: score 92.8, E = 4.2e-23
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      v+ w+ ++Va+WLes++l++++++F++n+idg++l++l   edL +l
   mKIAA1022  1062    VHlWTKPDVADWLESLNLGEHKETFMDNEIDGSHLPNLQ-KEDLIDL 1107 

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t++GhR  I +a+++l+++   
   mKIAA1022  1108 GVTRVGHRMNIERALKQLLDR    1128 

//