hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp08192/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1022  ( 1128 res)   mbp08192

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SAM_1      SAM domain (Sterile alpha motif)              93.9    3.2e-24   1
SAM_2      SAM domain (Sterile alpha motif)              79.6    6.4e-20   1
Extensin_2 Extensin-like region                        -132.8       0.27   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Extensin_2   1/1     645  1007 ..     1   385 []  -132.8     0.27
SAM_1        1/1    1063  1126 ..     1    66 []    93.9  3.2e-24
SAM_2        1/1    1062  1128 .]     1    72 []    79.6  6.4e-20

Alignments of top-scoring domains:
Extensin_2: domain 1 of 1, from 645 to 1007: score -132.8, E = 0.27
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                       +++  ++v+  +  ea     ++ PPPp       S  +       
   mKIAA1022   645    AVAPGRTIVAAGSVEEAV-ILPFRIPPPP-----LASVDL------- 678  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                         ++ +++  P PP         P     +S   P     S P+  
   mKIAA1022   679 ------DEDFLFTEPLPP---------P-LEFANSFDIPDDRAASVPALA 712  

                   .....ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkS
                   +  ++ k   P PPt         +S  P   +   k p  ++     + 
   mKIAA1022   713 dlvkqKKNDTPQPPT--------LNSSQPAN-STDSKKPAGISNCLPSSF 753  

                   PPPPp.............................................
                    PPP++ +  ++++ ++ +++++++++ +++++ ++ ++ ++ +++++++
   mKIAA1022   754 LPPPEsfdavtdsgieevdsrsssdhhlettstistvssistlssegges 803  

                   ....yvYkspPpPvkkripyvYkSPP.PPpPYvYkSpPppvkkyiykspp
                    ++  vY            +v   PP PP P   k  P + k       +
   mKIAA1022   804 mdtcTVYADGQ-------AFVVDKPPvPPKP---KMKPIVHKSNALYQDT 843  

                   ppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppky
                    pe++   +  PPP p                  PPPP       s    
   mKIAA1022   844 LPEEDTDGFVIPPPAP------------------PPPPG------SAQAG 869  

                   VYkSpPpPvipykYkSPPPPkkkyspaP.rkpyvYkSPPPPt.....yvY
                   V k   p +           +k     P++k+++ + P   + ++ + + 
   mKIAA1022   870 VAKVIQPRT-----------SKLWGDVPeVKSPILSGPKANViselnSIL 908  

                   kSpPpPykpptppkiyksPPPPtPvyvYkspPpippik........sssp
                   +   +  k+ +p+   + P         + +P+ p + ++ +++++ +  
   mKIAA1022   909 QQMNR-GKSVKPGEGLELPVGA---KSANLAPRSPEVMstvsgtrsTTVT 954  

                   pPvyvYkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkh.hYiY
                     v    S P   +s PP y  +   P       aP ++ sP + +  i 
   mKIAA1022   955 FTVRPGTSQPITLQSRPPDYESRTSGP-----RRAPSPVVSPTELsKEIL 999  

                   sSPPPphh<-*
                     PPPp     
   mKIAA1022  1000 PTPPPPSA    1007 

SAM_1: domain 1 of 1, from 1063 to 1126: score 93.9, E = 3.2e-24
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      + w+  +V++WLes+ l g+++++F + ++idg +l +l +eDL dl
   mKIAA1022  1063    HLWTKPDVADWLESLNL-GEHKETF-MDNEIDGSHLPNLQKEDLIDL 1107 

                   GvtllGHrkkIlssIqgLk<-*
                   Gvt++GHr+ I +++++L    
   mKIAA1022  1108 GVTRVGHRMNIERALKQLL    1126 

SAM_2: domain 1 of 1, from 1062 to 1128: score 79.6, E = 6.4e-20
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      v+ w+ ++va+WLes++l g++k+ F+d++i+g ++l ++l  edL 
   mKIAA1022  1062    VHLWTKPDVADWLESLNL-GEHKETFMDNEIDG-SHL-PNLQKEDL- 1104 

                   klalGitsvghRkkilskiqelkqq<-*
                   + +lG+t vghR  i +++++l+++   
   mKIAA1022  1105 I-DLGVTRVGHRMNIERALKQLLDR    1128 

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