hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09294/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1020  ( 642 res)   mpm09294

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    115.9    4.6e-30   5
BTB      Broad-Complex, Tramtrack and Bric a brac        91.2    1.2e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      69   166 ..     1   114 []    91.2  1.2e-22
ZnF_C2H2   1/5     469   491 ..     1    23 []    19.2     0.57
ZnF_C2H2   2/5     532   554 ..     1    23 []    27.5   0.0018
ZnF_C2H2   3/5     560   582 ..     1    23 []    32.6  5.2e-05
ZnF_C2H2   4/5     588   610 ..     1    23 []    30.3  0.00026
ZnF_C2H2   5/5     616   638 ..     1    23 []    26.5   0.0037

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 69 to 166: score 91.2, E = 1.2e-22
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+++v++          +f+a  Hk vLaa+   S yFk+l +++
   mKIAA1020    69    CDVIIMVEN---------SIFRA--HKNVLAAS---SIYFKSLVLHd 101  

                   ..ieldDeallievspeaFralLnflYt.kldlpeed.venveelLelAd
                   + i+ld +    +vs ++F+ +L+f+Yt+kl +++++++ n   lL +A+
   mKIAA1020   102 nlINLDTD----MVSSTVFQQILDFIYTgKLLPSDQPsEPNFSTLLTAAS 147  

                   fldSYGqip.lvelCeefllknl<-*
                   +l    q+p+l+ lC ++l++     
   mKIAA1020   148 YL----QLPeLAALCRRKLKRAG    166  

ZnF_C2H2: domain 1 of 5, from 469 to 491: score 19.2, E = 0.57
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   C k f+s ++L+ H+ +H   
   mKIAA1020   469    YVCIP-CAKGFPSSeQLNAHVETH    491  

ZnF_C2H2: domain 2 of 5, from 532 to 554: score 27.5, E = 0.0018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k+++++  L++H ++H   
   mKIAA1020   532    FKCSV-CEKTYKDPaTLRQHEKTH    554  

ZnF_C2H2: domain 3 of 5, from 560 to 582: score 32.6, E = 5.2e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cgk f++++ ++rHmr+H   
   mKIAA1020   560    FPCNI-CGKMFTQRgTMTRHMRSH    582  

ZnF_C2H2: domain 4 of 5, from 588 to 610: score 30.3, E = 0.00026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg++f+++  L++HmrvH   
   mKIAA1020   588    FACDE-CGMRFTRQyRLTEHMRVH    610  

ZnF_C2H2: domain 5 of 5, from 616 to 638: score 26.5, E = 0.0037
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg +f+++++L+ H+r+H   
   mKIAA1020   616    YECQL-CGGKFTQQrNLISHLRMH    638  

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