hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09294/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1020  ( 642 res)   mpm09294

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         125.0    1.4e-33   5
BTB      BTB/POZ domain                                 109.5    6.6e-29   1
K_tetra  K+ channel tetramerisation domain              -21.7       0.35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
K_tetra    1/1      71   158 ..     1   102 []   -21.7     0.35
BTB        1/1      59   166 ..     1   135 []   109.5  6.6e-29
zf-C2H2    1/5     469   491 ..     1    24 []    13.8      4.1
zf-C2H2    2/5     532   554 ..     1    24 []    31.9  1.5e-05
zf-C2H2    3/5     560   582 ..     1    24 []    37.2  3.7e-07
zf-C2H2    4/5     588   610 ..     1    24 []    32.2  1.2e-05
zf-C2H2    5/5     616   638 ..     1    24 []    28.7  0.00013

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 71 to 158: score -21.7, E = 0.35
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v++ V   +F+ +k+ L       ++++l+    h+ +   + + d 
   mKIAA1020    71    VIIMVENSIFRAHKNVLA--ASSIYFKSLVL---HDNLI--NLDTDM 110  

                   dtnEyFFDRsPkhFetILnfYRtGdGkLh...rp.evcldsfleEleFyg
                            s ++F  IL+f  t  GkL ++++p+e     +l  + + +
   mKIAA1020   111 V--------SSTVFQQILDFIYT--GKLLpsdQPsEPNFSTLLTAASYLQ 150  

                   ldelaielC<-*
                   l+el  +lC   
   mKIAA1020   151 LPEL-AALC    158  

BTB: domain 1 of 1, from 59 to 166: score 109.5, E = 6.6e-29
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r +g+lcDV+++v++          f+AHK vLaa+S YFk+l
   mKIAA1020    59    LNQQRAKGFLCDVIIMVEN--------SIFRAHKNVLAASSIYFKSL 97   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    +++          + +  ++ + vs+++f+++L+fiYtg+l ++     
   mKIAA1020    98 VLHD----------NLI-NLDTDMVSSTVFQQILDFIYTGKLLPS----- 131  

                   Pssc.kseenvedlLalAadllqipslvdkCeefliksl<-*
                       ++se n   lL +A ++lq+p l  +C ++l++     
   mKIAA1020   132 ---DqPSEPNFSTLLTAA-SYLQLPELAALCRRKLKRAG    166  

zf-C2H2: domain 1 of 5, from 469 to 491: score 13.8, E = 4.1
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C k F ++++L++H  tH   
   mKIAA1020   469    YVCI-PCAKGFPSSEQLNAHVETH    491  

zf-C2H2: domain 2 of 5, from 532 to 554: score 31.9, E = 1.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C k+++++++L++H +tH   
   mKIAA1020   532    FKCS-VCEKTYKDPATLRQHEKTH    554  

zf-C2H2: domain 3 of 5, from 560 to 582: score 37.2, E = 3.7e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+F+++++++rH+r+H   
   mKIAA1020   560    FPCN-ICGKMFTQRGTMTRHMRSH    582  

zf-C2H2: domain 4 of 5, from 588 to 610: score 32.2, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg +F+r++ L+ H+r+H   
   mKIAA1020   588    FACD-ECGMRFTRQYRLTEHMRVH    610  

zf-C2H2: domain 5 of 5, from 616 to 638: score 28.7, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg +F+++ nL +Hlr+H   
   mKIAA1020   616    YECQ-LCGGKFTQQRNLISHLRMH    638  

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