hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg00620/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1016 ( 777 res) mpg00620 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology domain 76.1 4.3e-18 1 LRR_TYP Leucine-rich repeats, typical (most populate 74.5 1.3e-17 5 LRR_PS Leucine-rich repeat, plant-specific subfamil 73.3 3.1e-17 7 LRR_BAC Leucine-rich repeats, bacterial type 34.7 1.3e-05 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/7 154 176 .. 1 24 [] 6.6 1.7e+02 LRR_TYP 1/5 177 199 .. 1 24 [] 10.5 21 LRR_PS 2/7 177 199 .. 1 24 [] 8.2 1e+02 LRR_BAC 1/4 200 219 .. 1 20 [] 11.7 18 LRR_PS 3/7 200 222 .. 1 24 [] 21.8 0.098 LRR_TYP 2/5 200 223 .. 1 24 [] 26.4 0.004 LRR_BAC 2/4 225 241 .. 1 20 [] 9.6 34 LRR_PS 4/7 223 244 .. 1 24 [] 4.5 3.1e+02 LRR_BAC 3/4 245 264 .. 1 20 [] 10.6 26 LRR_PS 5/7 245 267 .. 1 24 [] 17.8 1.5 LRR_TYP 3/5 245 267 .. 1 24 [] 11.5 17 LRR_BAC 4/4 268 288 .. 1 20 [] 12.2 16 LRR_PS 6/7 268 290 .. 1 24 [] 11.2 42 LRR_TYP 4/5 268 291 .. 1 24 [] 19.5 0.49 LRR_PS 7/7 313 335 .. 1 24 [] 10.9 47 LRR_TYP 5/5 313 336 .. 1 24 [] 11.0 19 CH 1/1 659 766 .. 1 100 [] 76.1 4.3e-18 Alignments of top-scoring domains: LRR_PS: domain 1 of 7, from 154 to 176: score 6.6, E = 1.7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ ++ dLs N+L e+P +l++ mKIAA1016 154 LSDTVRADLSKNRLV-EVPMELCQ 176 LRR_TYP: domain 1 of 5, from 177 to 199: score 10.5, E = 21 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L+ L+L +N ++ +P+ + + mKIAA1016 177 FVSLEILNLYHNCIRVIPEAI-VN 199 LRR_PS: domain 2 of 7, from 177 to 199: score 8.2, E = 1e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + sL++L+L++N + IP+ + n mKIAA1016 177 FVSLEILNLYHNCIR-VIPEAIVN 199 LRR_BAC: domain 1 of 4, from 200 to 219: score 11.7, E = 18 *->PpsLkeLnvsnNrLteLPeL<-* + L+ Ln s+N+L+ LP+ mKIAA1016 200 LQMLTHLNLSRNQLSALPAC 219 LRR_PS: domain 3 of 7, from 200 to 222: score 21.8, E = 0.098 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ L++L+Ls N+Ls +P++l+ mKIAA1016 200 LQMLTHLNLSRNQLS-ALPACLCG 222 LRR_TYP: domain 2 of 5, from 200 to 223: score 26.4, E = 0.004 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L L++L+Ls+NqL++LP+ +++ mKIAA1016 200 LQMLTHLNLSRNQLSALPACLCGL 223 LRR_BAC: domain 2 of 4, from 225 to 241: score 9.6, E = 34 *->PpsLkeLnvsnNrLteLPeL<-* Lk L +snN+L +LPe mKIAA1016 225 ---LKVLIASNNKLGSLPEE 241 LRR_PS: domain 4 of 7, from 223 to 244: score 4.5, E = 3.1e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ L+vL snN+L ++P+++g+ mKIAA1016 223 LP-LKVLIASNNKLG-SLPEEIGQ 244 LRR_BAC: domain 3 of 4, from 245 to 264: score 10.6, E = 26 *->PpsLkeLnvsnNrLteLPeL<-* +L eL+vs+N++t LP+ mKIAA1016 245 LKQLMELDVSCNEITALPQQ 264 LRR_PS: domain 5 of 7, from 245 to 267: score 17.8, E = 1.5 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L +Ld+s N ++ +P ++g+ mKIAA1016 245 LKQLMELDVSCNEIT-ALPQQIGQ 267 [output cut off at A = 10 top alignments] //