hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpg/mpg00620/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1016 ( 777 res) mpg00620 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology (CH) domain 78.8 1.1e-19 1 LRR_1 Leucine Rich Repeat 66.9 4.3e-16 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/6 179 201 .. 1 25 [] 16.1 0.86 LRR_1 2/6 202 221 .. 1 25 [] 10.1 42 LRR_1 3/6 224 246 .. 1 25 [] 11.1 27 LRR_1 4/6 247 269 .. 1 25 [] 12.2 12 LRR_1 5/6 270 292 .. 1 25 [] 16.3 0.72 LRR_1 6/6 315 338 .. 1 25 [] 8.2 89 CH 1/1 659 771 .. 1 121 [] 78.8 1.1e-19 Alignments of top-scoring domains: LRR_1: domain 1 of 6, from 179 to 201: score 16.1, E = 0.86 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Le+L+L + N + + +p+ + +l+ mKIAA1016 179 SLEILNLYH-N-CI-RVIPEAIvNLQ 201 LRR_1: domain 2 of 6, from 202 to 221: score 10.1, E = 42 *->nLeeLdLsgCNpslsgslppslglp<-* L++L+Ls+ N +ls lp+ l mKIAA1016 202 MLTHLNLSR-N-QLS-ALPA--CLC 221 LRR_1: domain 3 of 6, from 224 to 246: score 11.1, E = 27 *->nLeeLdLsgCNpslsgslppsl.glp<-* L++L s+ N +l gslp++++ l+ mKIAA1016 224 PLKVLIASN-N-KL-GSLPEEIgQLK 246 LRR_1: domain 4 of 6, from 247 to 269: score 12.2, E = 12 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L eLd+s+ N +++ lp ++ l+ mKIAA1016 247 QLMELDVSC-N-EIT-ALPQQIgQLK 269 LRR_1: domain 5 of 6, from 270 to 292: score 16.3, E = 0.72 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+eL++++ N +l + lpp+l +lp mKIAA1016 270 SLRELNVRR-N-YL-KVLPPELvDLP 292 LRR_1: domain 6 of 6, from 315 to 338: score 8.2, E = 89 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L++L L++ N +l+ s p+ + + + mKIAA1016 315 QLQVLLLEN-N-PLQ-SPPAQiCtKGK 338 CH: domain 1 of 1, from 659 to 771: score 78.8, E = 1.1e-19 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL +ekel++ +++ ++ +++ v+ ++ l+DG++Lc+L mKIAA1016 659 EEKELVEQLRESIEMRLK---------VTLHEDLGAALMDGVVLCHL 696 lnklrPglidkkkv.....pslsrfdkleNlnlaldaaekeGlgiilvli +n++rP+++ ++v+++ p+ls+ +++ N++++l+a++k G+++ +l+ mKIAA1016 697 ANHVRPRSVASIHVpspavPKLSMAKCRRNVENFLEACRKLGVPE-EKLC 745 dpeDivegnpdPDeklvltllwqLirrfq<-* p++i e + +v t++++L + mKIAA1016 746 LPHHILEEKG---LVKVGTTVQALLDVTV 771 //