hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh00453/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1015 ( 831 res) mbh00453 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LER leucine rich region 245.7 3.7e-69 1 ZnF_C2H2 zinc finger 220.5 1.4e-61 12 KRAB krueppel associated box 22.3 0.008 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LER 1/1 58 167 .. 1 113 [] 245.7 3.7e-69 KRAB 1/1 228 288 .. 1 62 [] 22.3 0.008 ZnF_C2H2 1/12 353 375 .. 1 23 [] 22.0 0.083 ZnF_C2H2 2/12 381 403 .. 1 23 [] 27.3 0.0022 ZnF_C2H2 3/12 409 431 .. 1 23 [] 23.3 0.033 ZnF_C2H2 4/12 437 459 .. 1 23 [] 26.9 0.0028 ZnF_C2H2 5/12 552 574 .. 1 23 [] 26.4 0.004 ZnF_C2H2 6/12 580 602 .. 1 23 [] 25.4 0.0079 ZnF_C2H2 7/12 608 630 .. 1 23 [] 24.3 0.017 ZnF_C2H2 8/12 636 658 .. 1 23 [] 27.3 0.0022 ZnF_C2H2 9/12 664 686 .. 1 23 [] 20.5 0.24 ZnF_C2H2 10/12 720 742 .. 1 23 [] 27.1 0.0025 ZnF_C2H2 11/12 776 798 .. 1 23 [] 24.8 0.012 ZnF_C2H2 12/12 804 826 .. 1 23 [] 25.9 0.0055 Alignments of top-scoring domains: LER: domain 1 of 1, from 58 to 167: score 245.7, E = 3.7e-69 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL E+f+qrF +F+Y+E++GPR ALS+LR+LC++WLRPElhTKEQILEL mKIAA1015 58 LETFYQRFKHFQYHEAAGPRDALSQLRVLCCEWLRPELHTKEQILEL 104 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LVLEQFLTILP+E+QaWVrehhPeSGEEAV+++E+++reL+e++qq++ mKIAA1015 105 LVLEQFLTILPEEFQAWVREHHPESGEEAVAVIESIQRELEERRQQIATS 154 vhgqevLleemvplga<-* + evL ++mvp+ga mKIAA1015 155 P---EVLPQKMVPPGA 167 KRAB: domain 1 of 1, from 228 to 288: score 22.3, E = 0.008 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk DVAV+F EEW +LD +Q+ L Rd +E ++ + ++ ++ + mKIAA1015 228 EDVADVAVSFILEEWAHLDQSQKSLGRDSRKEDCESTTPVD-YEPKE 273 pdliskLEqgeEpwi<-* l + ++q mKIAA1015 274 GNLEFTVQQVSDAAD 288 ZnF_C2H2: domain 1 of 12, from 353 to 375: score 22.0, E = 0.083 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C Cgk f +++++++H r+H mKIAA1015 353 HRCGD-CGKFFLQAsNFIQHRRIH 375 ZnF_C2H2: domain 2 of 12, from 381 to 403: score 27.3, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgks++++ +L++H+rvH mKIAA1015 381 FKCGE-CGKSYNQRvHLTQHQRVH 403 ZnF_C2H2: domain 3 of 12, from 409 to 431: score 23.3, E = 0.033 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ ++L++H vH mKIAA1015 409 YKCQV-CGKAFRVSsHLVQHHSVH 431 ZnF_C2H2: domain 4 of 12, from 437 to 459: score 26.9, E = 0.0028 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksf ++++L++H+++H mKIAA1015 437 YGCNE-CGKSFGRHsHLIEHLKRH 459 ZnF_C2H2: domain 5 of 12, from 552 to 574: score 26.4, E = 0.004 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgksf + +L++H r+H mKIAA1015 552 HQCNE-CGKSFIQSaHLIQHRRIH 574 ZnF_C2H2: domain 6 of 12, from 580 to 602: score 25.4, E = 0.0079 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgks++++ +L++H rvH mKIAA1015 580 FRCEE-CGKSYNQRvHLTQHHRVH 602 ZnF_C2H2: domain 7 of 12, from 608 to 630: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ +++L++H+ vH mKIAA1015 608 YACHL-CGKAFRVRsHLVQHQSVH 630 ZnF_C2H2: domain 8 of 12, from 636 to 658: score 27.3, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f ++++L H+r H mKIAA1015 636 FKCNE-CGKGFGRRsHLAGHLRLH 658 [output cut off at A = 10 top alignments] //