hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00453/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1015  ( 831 res)   mbh00453

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         279.5    4.4e-80  12
SCAN     SCAN domain                                    203.4    3.5e-57   1
KRAB     KRAB box                                        44.6    2.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SCAN       1/1      56   151 ..     1    96 []   203.4  3.5e-57
KRAB       1/1     230   268 ..     1    41 []    44.6  2.2e-09
zf-C2H2    1/12    353   375 ..     1    24 []    28.7  0.00013
zf-C2H2    2/12    381   403 ..     1    24 []    33.6  4.6e-06
zf-C2H2    3/12    409   431 ..     1    24 []    30.7  3.4e-05
zf-C2H2    4/12    437   459 ..     1    24 []    30.4  4.1e-05
zf-C2H2    5/12    552   574 ..     1    24 []    32.6  8.9e-06
zf-C2H2    6/12    580   602 ..     1    24 []    30.7  3.5e-05
zf-C2H2    7/12    608   630 ..     1    24 []    31.2  2.3e-05
zf-C2H2    8/12    636   658 ..     1    24 []    32.1  1.3e-05
zf-C2H2    9/12    664   686 ..     1    24 []    20.1    0.052
zf-C2H2   10/12    720   742 ..     1    24 []    35.2  1.5e-06
zf-C2H2   11/12    776   798 ..     1    24 []    30.8  3.1e-05
zf-C2H2   12/12    804   826 ..     1    24 []    26.2  0.00075

Alignments of top-scoring domains:
SCAN: domain 1 of 1, from 56 to 151: score 203.4, E = 3.5e-57
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                      p  E+f qrF  f Y+e++GPr ALs+LR LC++WLrPE+hTKEQIL
   mKIAA1015    56    PVLETFYQRFKHFQYHEAAGPRDALSQLRVLCCEWLRPELHTKEQIL 102  

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFLtILP+E QawV+ehhPeSgEEaV+++E ++rel+e +qq+ 
   mKIAA1015   103 ELLVLEQFLTILPEEFQAWVREHHPESGEEAVAVIESIQRELEERRQQI  151  

                   -*
                     
   mKIAA1015     -    -    

KRAB: domain 1 of 1, from 230 to 268: score 44.6, E = 2.2e-09
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                          DVAV+F  EEW++Ld +Q++L rd  +E +++ + ++   
   mKIAA1015   230    --VADVAVSFILEEWAHLDQSQKSLGRDSRKEDCESTTPVD    268  

zf-C2H2: domain 1 of 12, from 353 to 375: score 28.7, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  dCgk F + sn+ +H+r+H   
   mKIAA1015   353    HRCG-DCGKFFLQASNFIQHRRIH    375  

zf-C2H2: domain 2 of 12, from 381 to 403: score 33.6, E = 4.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC  +Cgks++++ +L++H+r+H   
   mKIAA1015   381    FKCG-ECGKSYNQRVHLTQHQRVH    403  

zf-C2H2: domain 3 of 12, from 409 to 431: score 30.7, E = 3.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+ +s+L +H  +H   
   mKIAA1015   409    YKCQ-VCGKAFRVSSHLVQHHSVH    431  

zf-C2H2: domain 4 of 12, from 437 to 459: score 30.4, E = 4.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +CgksF r+s+L  Hl++H   
   mKIAA1015   437    YGCN-ECGKSFGRHSHLIEHLKRH    459  

zf-C2H2: domain 5 of 12, from 552 to 574: score 32.6, E = 8.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +CgksF ++++L +H+r+H   
   mKIAA1015   552    HQCN-ECGKSFIQSAHLIQHRRIH    574  

zf-C2H2: domain 6 of 12, from 580 to 602: score 30.7, E = 3.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgks++++ +L++H r+H   
   mKIAA1015   580    FRCE-ECGKSYNQRVHLTQHHRVH    602  

zf-C2H2: domain 7 of 12, from 608 to 630: score 31.2, E = 2.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  Cgk+F+ +s+L +H+ +H   
   mKIAA1015   608    YACH-LCGKAFRVRSHLVQHQSVH    630  

zf-C2H2: domain 8 of 12, from 636 to 658: score 32.1, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk F r+s+L  Hlr H   
   mKIAA1015   636    FKCN-ECGKGFGRRSHLAGHLRLH    658  

zf-C2H2: domain 9 of 12, from 664 to 686: score 20.1, E = 0.052
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg+ F +  +L  H+  H   
   mKIAA1015   664    HQCH-ECGEIFFQYVSLLEHQVLH    686  

zf-C2H2: domain 10 of 12, from 720 to 742: score 35.2, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+Fs +s+L +H rtH   
   mKIAA1015   720    YQCD-SCGKAFSYSSDLIQHYRTH    742  

zf-C2H2: domain 11 of 12, from 776 to 798: score 30.8, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg+ Fs ks+L +H+r+H   
   mKIAA1015   776    HQCN-ECGRGFSLKSHLSQHQRIH    798  

zf-C2H2: domain 12 of 12, from 804 to 826: score 26.2, E = 0.00075
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cg sFs + +L +Hlr+H   
   mKIAA1015   804    LQCK-ECGMSFSWSCSLFKHLRSH    826  

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