hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00833/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1013  ( 989 res)   mpg00833

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                            131.0    1.3e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1       9   214 ..     1   232 []   131.0  1.3e-34

Alignments of top-scoring domains:
B41: domain 1 of 1, from 9 to 214: score 131.0, E = 1.3e-34
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                        + r++ V+lld+  le+ v+++   +ell+ v+ +++l  +e+ey
   mKIAA1013     9    MTEGRHCQVHLLDDRRLELLVQPKLLSRELLDLVASHFNL--KEKEY 53   

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   Fg+ f+d++++  Wl+++  +l++d    k++p  l+F v+Fy++     
   mKIAA1013    54 FGITFIDDTGQENWLQLDHRVLEHDLP-KKPGPTLLHFAVRFYIES---- 98   

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                    + lk+ +t++ l++l ++  + +G + +   e+ + LAaL lq   Gdy
   mKIAA1013    99 ISFLKDKNTVE-LFFLNAKACVHKGQIEVD-SETIFKLAALVLQESKGDY 146  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                    +         +  +k+l     +P ++l+++          l + ++r+
   mKIAA1013   147 TSD--------ENARKDLKTLPVFPTKTLQEHPS--------LAYCEDRV 180  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                    e + +++gl++ +a ++Y+++++ Lp tYGv+++   
   mKIAA1013   181 IEHYLKIKGLTRGQAVVQYMKIVEALP-TYGVHYY    214  

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