hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00833/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1013  ( 989 res)   mpg00833

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Band_41  FERM domain (Band 4.1 family)                   72.4    9.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Band_41    1/1      15   214 ..     1   210 []    72.4  9.2e-18

Alignments of top-scoring domains:
Band_41: domain 1 of 1, from 15 to 214: score 72.4, E = 9.2e-18
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c v+llD+   e+ v++k +   LLd+V  h +l Ek+YFG  ++D 
   mKIAA1013    15    CQVHLLDDRRLELLVQPKLLSRELLDLVASHFNLKEKEYFGITFID- 60   

                   DnsskdsptWLdpsKkirkQdv.kkeePytLhFRvKFYpeDvpneLrqei
                       +++ +WL ++  ++++d++kk  P  LhF v+FY+e     L +  
   mKIAA1013    61 ---DTGQENWLQLDHRVLEHDLpKKPGPTLLHFAVRFYIES-ISFLKDKN 106  

                   TrylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRt
                   T  lffL +k     G + + +et   LA  + Q   GDY + ++ +   
   mKIAA1013   107 TVELFFLNAKACVHKGQIEVDSETIFKLAALVLQESKGDYTSDENARK-- 154  

                   CLCYLsdekllPqRVlnqkqltkddf......EekIaelHkeHrGmspde
                         d k+lP  V   k    ++ ++    E+++ e +    G+++ +
   mKIAA1013   155 ------DLKTLP--VFPTKT--LQEHpslaycEDRVIEHYLKIKGLTRGQ 194  

                   AeleYLkiArdLemYGVdff<-*
                   A + Y ki   L +YGV ++   
   mKIAA1013   195 AVVQYMKIVEALPTYGVHYY    214  

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