hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00096/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1011 ( 1666 res) mbg00096 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SPEC Spectrin repeats 213.2 2.4e-59 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SPEC 1/9 38 146 .. 1 104 [] 0.1 8.5 SPEC 2/9 358 456 .. 1 104 [] 10.4 0.99 SPEC 3/9 575 675 .. 1 104 [] 4.1 3.7 SPEC 4/9 682 780 .. 1 104 [] 41.4 1.2e-07 SPEC 5/9 787 894 .. 1 104 [] 52.0 7.6e-11 SPEC 6/9 901 1003 .. 1 104 [] 54.8 1.1e-11 SPEC 7/9 1010 1110 .. 1 104 [] 51.2 1.3e-10 SPEC 8/9 1337 1440 .. 1 104 [] 38.4 9.5e-07 SPEC 9/9 1447 1551 .. 1 104 [] 21.9 0.09 Alignments of top-scoring domains: SPEC: domain 1 of 9, from 38 to 146: score 0.1, E = 8.5 *->qqFlrdadel..eaWleeke...qllssedlgeskDlesveallkkH q+ +++d l +ea ++ ++ + + s++ +l+++ + + + mKIAA1011 38 QE-WKACDKLydEATMRTTQltySMEHSKPAV--LSLQALACQVQNL 81 qaleaelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWe.. +al++e ++ e + ++l+e +L ++ ++ a Iee++++ ++rW + mKIAA1011 82 EALQDEAENGERSWEKLQEVIGRLRAS-CPSMAGIIEEKCQDAHSRWTqv 130 ..eLlelaeeRrqkLe<-* +++L ++++e r +L+ mKIAA1011 131 nqDLADQLQEARGQLQ 146 SPEC: domain 2 of 9, from 358 to 456: score 10.4, E = 0.99 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++Fl+ ++ ++ le ++ l s +++ ++l+++ +++k + lea mKIAA1011 358 EKFLHYCERWIQVLEKIQESL-SVEVA--HSLPALLEQQKTYEILEA 401 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++++++ da + qL++ ++ + +e +L ++W+ +++ mKIAA1011 402 EVSTNQAVADAYVTQSLQLLDTAEIEKRPEFVSEFSKLSDQWQ--RAARG 449 eRrqkLe<-* R++k + mKIAA1011 450 VRQRKCD 456 SPEC: domain 3 of 9, from 575 to 675: score 4.1, E = 3.7 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q ++++ l++ l+ + + s ++l+ e++ + + ++ e+ mKIAA1011 575 DQCKKKIKKLKKRLQALK-AQSEDPLP--ELHEALHEEKELIKEVEK 618 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae la++ ++++l+ + +L + +d ++e+++ L+++We+L+ +++ mKIAA1011 619 SLANWTHSLKELQTMKADLSQHILAEDVTVLKEQIQLLHRQWEDLCLRVA 668 eRrqkLe<-* R+q e mKIAA1011 669 IRKQEIE 675 SPEC: domain 4 of 9, from 682 to 780: score 41.4, E = 1.2e-07 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale F+++ +el aWl +e+++l++ d+ +e +e+l+k + + mKIAA1011 682 IVFNEKNKELCAWLVQMEnKVLQTADV---SIEEMIEKLQK---DCM 722 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela +e++ e +l+++g+qLi++s+ + a+e+ee+l ++n+rW++L + mKIAA1011 723 EEISLFTENKLQLKQMGDQLIKASSKAKAAELEEKLSKINDRWQHLFDVI 772 eeRrqkLe<-* R +kL+ mKIAA1011 773 GSRVKKLK 780 SPEC: domain 5 of 9, from 787 to 894: score 52.0, E = 7.6e-11 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qq+ +++ l Wl e ls + ++ D +++++ l ++q+l++ mKIAA1011 787 QQLDKNMSNLRTWLARIESELSKPVVYDVCDNQEIQKRLAEQQDLQR 833 elaaheervdalnelgeqLiee....sghpdaeeIeerleeLnerWeeLl ++++h + v+++ + ++ L+ +++ +++ + ++I++ + L++rW++++ mKIAA1011 834 DIEQHSAGVESVFNICDVLLHDsdacANETECDSIQQTTRSLDRRWRNIC 883 elaeeRrqkLe<-* +++ eRr k e mKIAA1011 884 AMSMERRMKIE 894 SPEC: domain 6 of 9, from 901 to 1003: score 54.8, E = 1.1e-11 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+Fl+d +e+Wl+++e+ ++ + + +++++ lk+++a+++ mKIAA1011 901 QKFLDDYSRFEDWLKSAERTAACPNSS-EVLYTNAKEELKRFEAFQR 946 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae + ++ +++ +n++ ++L +e + a ++++ ++e n+rW++L++++ mKIAA1011 947 QIHERLTQLELINKQYRRLARENRTDTASKLKQMVHEGNQRWDNLQKRVT 996 eRrqkLe<-* + ++L mKIAA1011 997 AILRRLR 1003 SPEC: domain 7 of 9, from 1010 to 1110: score 51.2, E = 1.3e-10 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F + ++ Wl+e+ +l+ ++ +++++e++++++ +++ mKIAA1011 1010 EEFEGTRESILVWLTEMDLQLTNVEH---FSESDAEDKMRQLNGFQQ 1053 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++ + +++d+l+ geqLi++s++ da Ie+ leeL++ +e+ ++ mKIAA1011 1054 EITLNTNKIDQLIVFGEQLIQKSEPLDAVLIEDELEELHRYCQEVFGRVS 1103 eRrqkLe<-* + +++L mKIAA1011 1104 RFHRRLT 1110 SPEC: domain 8 of 9, from 1337 to 1440: score 38.4, E = 9.5e-07 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa qq+ +d+ + aWl+ +e + ++l+ +++ D++++ k++q+ mKIAA1011 1337 QQLKSDIGSIAAWLGKTEaelEALKLAEPP--SDIQEIALRVKRLQE 1381 leaelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLle + + +++++ + ++n ++ + + + p+a e+++rl++L W++++ mKIAA1011 1382 ILKAFDTYKALMVSVNVSHKEYLPS-QSPEATELQNRLHQLSLSWDSVQG 1430 laeeRrqkLe<-* ++ +r L mKIAA1011 1431 VLDSWRGDLR 1440 SPEC: domain 9 of 9, from 1447 to 1551: score 21.9, E = 0.09 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa q F++ ++l+ Wl +e+++q + + + D + + + +k + + mKIAA1011 1447 QDFHQLSQDLLLWLATAEsrrQKAHVTSPE--ADRQVLLECQKDLMR 1491 leaelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLle le+el a++++v++l e L+ + +++d e ee+++ ++++ ++L+e mKIAA1011 1492 LEKELVARQPQVSSLREISSSLLVKGQGEDYIEAEEKVHVIEKKLKQLQE 1541 laeeRrqkLe<-* ++++ L+ mKIAA1011 1542 QVAQDLMSLQ 1551 //