hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00096/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1011 ( 1666 res) mbg00096 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spectrin Spectrin repeat 81.3 2e-20 7 PspA_IM30 PspA/IM30 family -59.1 0.29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spectrin 1/7 572 676 .. 1 108 [] -11.6 4.6 PspA_IM30 1/1 539 760 .. 1 241 [] -59.1 0.29 Spectrin 2/7 679 781 .. 1 108 [] 25.1 0.0016 Spectrin 3/7 784 895 .. 1 108 [] 31.3 2.2e-05 Spectrin 4/7 898 1004 .. 1 108 [] 19.0 0.022 Spectrin 5/7 1007 1111 .. 1 108 [] 27.2 0.00037 Spectrin 6/7 1334 1441 .. 1 108 [] 24.6 0.0023 Spectrin 7/7 1444 1552 .. 1 108 [] 10.6 0.094 Alignments of top-scoring domains: Spectrin: domain 1 of 7, from 572 to 676: score -11.6, E = 4.6 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + + q ++ + l++ ++ +a+ ++ ++ e++ + ++ e mKIAA1011 572 ETWDQCKKKIKKLKKRLQALKAQSEDPLPE-LHEALHEEKELIKEVE 617 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle + la++ +++l+ + +L + + +d +ke+++ L+++We+L+ mKIAA1011 618 KSLANWT-HSLKELQTMKADLSQHILA-EDVTVLKEQIQLLHRQWEDLCL 665 laaeRkqkLee<-* ++a Rkq+ e+ mKIAA1011 666 RVAIRKQEIED 676 PspA_IM30: domain 1 of 1, from 539 to 760: score -59.1, E = 0.29 *->giFkRllrllrAnihegldkaEDPeAlkiLeQairdmeselakarqa + + ++i+ ++++ D+e ++++ s l+ ++ mKIAA1011 539 ------REFVDGQISRLQESWKDTE------LSLGEVISRLQSTAET 573 lAqviArqkqlerkleeqkeqakklekkAkaALtkGdeakiaaeEeEeLA q ++ k+l+++l ++k+q+++ +AL eL+ mKIAA1011 574 WDQCKKKIKKLKKRLQALKAQSEDPLPELHEALHEE----------KELI 613 rEaLaekktlekqaealetqlaqqrsaveqLrkqlaaLEtKiqelkakke +E+ ++++ ++++++l+t a + ++ L + ++ L+ +iq l ++ e mKIAA1011 614 KEVEKSLANWTHSLKELQTMKADLSQHI--LAEDVTVLKEQIQLLHRQWE 661 lLkaRlkaAkAqeavqkslgk...lssltesAtdsfeRieeK........ L +R +A+ +++++ +l + + +++ + + + ++e+K ++ + + mKIAA1011 662 DLCLR--VAIRKQEIEDRLNSwivFNEKNKELCAWLVQMENKvlqtadvs 709 ieer..EaradaaaelagssaqaGaDldakleaagiqkeveSsaedvLar iee+ + + d ++e +++ + +l++ g q + s +++ a+ mKIAA1011 710 IEEMieKLQKDCMEEISLFTEN-----KLQLKQMGDQLIK-ASSKAKAAE 753 Lkaeqgk<-* L++ +k mKIAA1011 754 LEEKLSK 760 Spectrin: domain 2 of 7, from 679 to 781: score 25.1, E = 0.0016 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + + F+ + +el +W+ ++e+ + ++ + e+ +l+k + + mKIAA1011 679 NSWIVFNEKNKELCAWLVQMENKVLQTADV-SIEEMIEKLQK--DCM 722 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ +++ ql +++++Li +++ + e++e+l+ +n+rW++L + mKIAA1011 723 EEISLFT-ENKLQLKQMGDQLIKASS-KAKAAELEEKLSKINDRWQHLFD 770 laaeRkqkLee<-* + R +kL e mKIAA1011 771 VIGSRVKKLKE 781 Spectrin: domain 3 of 7, from 784 to 895: score 31.3, E = 2.2e-05 *->lllqqFqrdadelesWisekeallssedygk..DlesvqaLlkkHea +qq+ ++++ l W+ +e +ls + D +++q+ l +++ mKIAA1011 784 AFIQQLDKNMSNLRTWLARIESELSKPVVYDvcDNQEIQKRLAEQQD 830 feaelaahqqdrvdqlnelaqkLieeged...hpdseeikerleeLnerW +++++++h + v+++ + + L+ ++ + + + + i+++ L++rW mKIAA1011 831 LQRDIEQHS-AGVESVFNICDVLLHDSDAcanETECDSIQQTTRSLDRRW 879 eaLlelaaeRkqkLee<-* ++++++ +eR+ k ee mKIAA1011 880 RNICAMSMERRMKIEE 895 Spectrin: domain 4 of 7, from 898 to 1004: score 19.0, E = 0.022 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf l+q+F d + +e W+ +e++++ + + ++++ lk++eaf mKIAA1011 898 RLWQKFLDDYSRFEDWLKSAERTAACPNSSEvLYTNAKEELKRFEAF 944 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl ++ ++ + ++++ +n++ ++L e+++ + + ++k+ + e n+rW++L+ mKIAA1011 945 QRQIHERL-TQLELINKQYRRLARENRT-DTASKLKQMVHEGNQRWDNLQ 992 elaaeRkqkLee<-* +++ + ++L+ mKIAA1011 993 KRVTAILRRLRY 1004 Spectrin: domain 5 of 7, from 1007 to 1111: score 27.2, E = 0.00037 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++ ++F + ++ W++e++ +l++ ++ ++++++++++++ +f+ mKIAA1011 1007 NQREEFEGTRESILVWLTEMDLQLTNVEHF-SESDAEDKMRQLNGFQ 1052 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ + ++dql ++++Li+++e + d+ i++ leeL++ +++ mKIAA1011 1053 QEITLNT-NKIDQLIVFGEQLIQKSE-PLDAVLIEDELEELHRYCQEVFG 1100 laaeRkqkLee<-* ++ + +++L mKIAA1011 1101 RVSRFHRRLTS 1111 Spectrin: domain 6 of 7, from 1334 to 1441: score 24.6, E = 0.0023 *->lllqqFqrdadelesWisekeallssedygk...DlesvqaLlkkHe + qq+ d + +W++++ea+l+ ++++++D +++ +k+++ mKIAA1011 1334 QTVQQLKSDIGSIAAWLGKTEAELEALKLAEppsDIQEIALRVKRLQ 1380 afeaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWea ++ + ++++ + + ++n + + ++ p++ e++ rl +L W++ mKIAA1011 1381 EILKAFDTYK-ALMVSVNVSHKEYLPSQ--SPEATELQNRLHQLSLSWDS 1427 LlelaaeRkqkLee<-* ++ ++ ++ L++ mKIAA1011 1428 VQGVLDSWRGDLRQ 1441 Spectrin: domain 7 of 7, from 1444 to 1552: score 10.6, E = 0.094 *->lllqqFqrdadelesWiseke.....allssedygkDlesvqaLlkk + q F++ ++l++W+ +e+++++a ++s + D + + +k mKIAA1011 1444 MQCQDFHQLSQDLLLWLATAEsrrqkAHVTSPEA--DRQVLLECQKD 1488 HeafeaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerW + ++e+el a+q ++v++l e+ +L+ +g+ ++d e +e++ ++++ mKIAA1011 1489 LMRLEKELVARQ-PQVSSLREISSSLLVKGQ-GEDYIEAEEKVHVIEKKL 1536 eaLlelaaeRkqkLee<-* ++L+e++a+ L++ mKIAA1011 1537 KQLQEQVAQDLMSLQR 1552 //