hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08036/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1008  ( 451 res)   mpm08036

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RNB      RNB-like protein                                56.7    5.2e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RNB        1/1     331   451 .]     1   248 []    56.7  5.2e-13

Alignments of top-scoring domains:
RNB: domain 1 of 1, from 331 to 451: score 56.7, E = 5.2e-13
                   *->rDlrdllivTIkDpetarDfWvDDAlsvkkldnntdGtyeLgVHIAD
                      +Dlr+l ++++ Dp++++D+  DDAl+++ l+n   G++e+gVHIAD
   mKIAA1008   331    EDLRHLCVCSV-DPPGCTDI--DDALHCRELSN---GNLEVGVHIAD 371  

                   VthyVkpgSsLDkEAakRgtsvYLPqkYvvPMLPeeLsdglCSLkpnedR
                   V+h+++pg +LD+E a+Rgt+vYL++k +++M Pe+Ls +lCSL+ n+dR
   mKIAA1008   372 VSHFIRPGNALDQESARRGTTVYLCEK-RIDMVPELLSSNLCSLRSNVDR 420  

                   lalScemtlDesGkeikdvkigpSvIrskarltYeevdeiLetkeesatk
                   la+Sc++++++++ ei ++++++SvI+sk                     
   mKIAA1008   421 LAFSCIWEMNHNA-EILKTRFTKSVINSK--------------------- 448  

                   desldseseplvesLrllfelakklrkkRlkrGlaldlFespelkfslDd
                                                                     
   mKIAA1008   449 ------------------------------------------------V- 449  

                   eegpiepieieieersdaesllieEfMllANeaVArhlyeefgipalyRr
                                      s+                             
   mKIAA1008   450 -------------------SV----------------------------- 451  

                   H<-*
                       
   mKIAA1008     - -    -    

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