hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10165/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1007  ( 1458 res)   mpm10165

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Not1     CCR4-Not complex component, Not1               988.9   1.3e-293   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Not1       1/1    1078  1458 .]     1   415 []   988.9 1.3e-293

Alignments of top-scoring domains:
Not1: domain 1 of 1, from 1078 to 1458: score 988.9, E = 1.3e-293
                   *->sllsELatirthdaedilesitrqelvsilsaFlntFsgylhaLqPr
                      +ll+EL+     ++e++le+i    ++++l+aF+ntF    h+L+P+
   mKIAA1007  1078    MLLLELN-----APEHVLETI----NFQTLTAFCNTF----HILRPT 1111 

                   afCPgFsFAWleLiSHRmlLprlLantGiaetvpnqKgwplyaqLLiDLl
                   ++ PgF++AWleLiSHR++++r+La+      +p+qKgwp+yaqLLiDL+
   mKIAA1007  1112 KA-PGFVYAWLELISHRIFIARMLAH------TPQQKGWPMYAQLLIDLF 1154 

                   KFLdPFLrnaelgkpvqlLYKGTLRVLLVLLHDFPeFLcdyHYelcdvIP
                   K+L+PFLrn+el+kp+q+LYKGTLRVLLVLLHDFPeFLcdyHY++cdvIP
   mKIAA1007  1155 KYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP 1204 

                   pnCvQLRNlILSAFPrnMrLPDPFtpnLKqVdmLPEikeaPkilssvvas
                   pnC+QLRNlILSAFPrnMrLPDPFtpnLK VdmL+Ei++aP+il+++ ++
   mKIAA1007  1205 PNCIQLRNLILSAFPRNMRLPDPFTPNLK-VDMLSEINIAPRILTNF-TG 1252 

                   lepkqlkkDLDeYLksRkpNvtFlseLrtelqvssdiKkGvgydgtryns
                   ++p+q+kkDLD+YLk+R+p vtFls+Lr++lqvs++  +     g+ryn+
   mKIAA1007  1253 VMPPQFKKDLDSYLKTRSP-VTFLSDLRSNLQVSNE--P-----GNRYNL 1294 

                   kLiNaLVLyvGiqAIahieaKrassntvnitkSsymdifqnLavdlDtEg
                   +LiNaLVLyvG+qAIahi++K++++++++it+S++mdifqnLavdlDtEg
   mKIAA1007  1295 QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 1344 

                   RYllLnAIANQLRYPNsHThYFSCvlLYLFkesenedQkLaIQEQITRVL
                   RYl+LnAIANQLRYPNsHThYFSC++LYLF+e+++e    aIQEQITRVL
   mKIAA1007  1345 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTE----AIQEQITRVL 1390 

                   LERLIVNRPHPWGLLITFiELIKNpdYnFWkhpFvkcaPEIekLFqsvar
                   LERLIVNRPHPWGLLITFiELIKNp+++FW+h+Fv+caPEIekLFqsva+
   mKIAA1007  1391 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQ 1440 

                   scmaasssqqvmqsegae<-*
                   +cm+++++qqvm+++ga+   
   mKIAA1007  1441 CCMGQKQAQQVMEGTGAS    1458 

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