hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02443/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1004  ( 709 res)   mtj02443

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 29.2    0.00056   1
LRR_CC   Leucine-rich repeat - CC (cysteine-containin    25.9     0.0057   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     167   224 ..     1    39 []    29.2  0.00056
LRR_CC     1/3     547   572 ..     1    26 []     1.5  4.7e+02
LRR_CC     2/3     610   638 ..     1    26 []    20.7      0.2
LRR_CC     3/3     642   665 ..     1    26 []     4.8  1.8e+02

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 167 to 224: score 29.2, E = 0.00056
                   *->yC.vCgk...........g.llqCdkgCdrwyHv.Clgpple.....
                      +C++Cg+ + ++++ + + +l+ C   C+  +H++Cl++++e+  ++
   mKIAA1004   167    TCsLCGEvdqneetqdfeKkLMECC-ICNEIVHPgCLQMDGEgllne 212  

                   epdg.wyCprCk<-*
                   e +  w Cp+C    
   mKIAA1004   213 ELPNcWECPKCY    224  

LRR_CC: domain 1 of 3, from 547 to 572: score 1.5, E = 4.7e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      Cp L++LdL++ + i D  ++ L      
   mKIAA1004   547    CPLLRTLDLRWAVGIKDPQIRDLLTP    572  

LRR_CC: domain 2 of 3, from 610 to 638: score 20.7, E = 0.2
                   *->CpnLkeLdLsgCsniTD...eglqaLakg<-*
                      +p L +LdLs+Cs++TD++++ l a++++   
   mKIAA1004   610    MPLLSRLDLSHCSHLTDqssNLLTAVGSS    638  

LRR_CC: domain 3 of 3, from 642 to 665: score 4.8, E = 1.8e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        +L+eL++ gC ++TD++l+ L +    
   mKIAA1004   642    --SLTELNMAGCNKLTDQTLFFLRRI    665  

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