hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02443/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1004  ( 709 res)   mtj02443

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-CXXC  CXXC zinc finger                                65.4    1.2e-15   1
F-box    F-box domain                                    25.4     0.0013   2
LRR_1    Leucine Rich Repeat                             15.9       0.96   4
PHD      PHD-finger                                       8.0      0.051   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CXXC    1/1     111   157 ..     1    49 []    65.4  1.2e-15
PHD        1/1     167   226 ..     1    51 []     8.0    0.051
F-box      1/2     437   482 ..     1    44 []    28.5  0.00016
LRR_1      1/4     500   527 ..     1    25 []     2.7  7.1e+02
LRR_1      2/4     612   633 ..     1    25 []     3.5  5.1e+02
F-box      2/2     595   639 ..     1    44 []     0.5       81
LRR_1      3/4     642   666 ..     1    25 []     4.8  3.2e+02
LRR_1      4/4     667   692 ..     1    25 []     9.6       51

Alignments of top-scoring domains:
zf-CXXC: domain 1 of 1, from 111 to 157: score 65.4, E = 1.2e-15
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                       ++r+r+rC++C +C +  +CG+C++C+d++kFGGpgr+kQ +C+ R
   mKIAA1004   111    GARRRRVRCRKCKACVQG-ECGVCHYCRDMKKFGGPGRMKQ-SCVLR 155  

                   RC<-*
                   +C   
   mKIAA1004   156 QC    157  

PHD: domain 1 of 1, from 167 to 226: score 8.0, E = 0.051
                   *->yCsvCgkpddd.....aggdllqCDgCdrwfHlaClgpple....ep
                       Cs+Cg++d ++++++ +++l+ C  C++ +H+ Cl+++ e+  +e+
   mKIAA1004   167    TCSLCGEVDQNeetqdFEKKLMECCICNEIVHPGCLQMDGEgllnEE 213  

                   pegkWlCpeCtpk<-*
                    +  W Cp+C  +   
   mKIAA1004   214 LPNCWECPKCYQE    226  

F-box: domain 1 of 2, from 437 to 482: score 28.5, E = 0.00016
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                       + +  e++  ++++L+ k+l+ +++V+k+w++ + +++lw ++ l 
   mKIAA1004   437    ESWMQREVWMSVFRYLSRKELCECMRVCKTWYKWCCDKrLWTkIDL  482  

                   -*
                     
   mKIAA1004     -    -    

LRR_1: domain 1 of 4, from 500 to 527: score 2.7, E = 7.1e+02
                   *->nLeeLdLsgCNpslsgs....lppsl.glp<-*
                      +  +LdLs  + ++s+   + l + l+gl+   
   mKIAA1004   500    QPVSLDLSW-T-NISKKqltwLVNRLpGLK    527  

LRR_1: domain 2 of 4, from 612 to 633: score 3.5, E = 5.1e+02
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                       L  LdLs+C ++l++  ++   l+   
   mKIAA1004   612    LLSRLDLSHC-SHLTDQSSN--LLT    633  

F-box: domain 2 of 2, from 595 to 639: score 0.5, E = 81
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                       ld+ d  l+ I++++++ ++l ls +S+ + + +++l   +++++ 
   mKIAA1004   595    GLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQ-SSNLlTAVgSST  639  

                   -*
                     
   mKIAA1004     -    -    

LRR_1: domain 3 of 4, from 642 to 666: score 4.8, E = 3.2e+02
                   *->nLeeLdLsgCNpslsgs..lppsl.glp<-*
                      +L+eL++ gC ++l+ + +l   l+      
   mKIAA1004   642    SLTELNMAGC-NKLT-DqtLFF-LrRIA    666  

LRR_1: domain 4 of 4, from 667 to 692: score 9.6, E = 51
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      n++ +dL+gC +++++   ++ +++l+   
   mKIAA1004   667    NVTLIDLRGC-KQITRKACEHfIsDLS    692  

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