hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10286/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1003  ( 961 res)   mfj10286

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_UBP  Ubiquitin Carboxyl-terminal Hydrolase-like z    24.0     0.0061   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_UBP    1/1      74   126 ..     1    61 []    24.0   0.0061

Alignments of top-scoring domains:
ZnF_UBP: domain 1 of 1, from 74 to 126: score 24.0, E = 0.0061
                   *->rCsvEvCgtie.nGalWlCL..iCGqvgCGRyqeggdGgGnsHaleH
                      +C+   Cg   +n  lW+CL+ +C +vgCG++         +H+  H
   mKIAA1003    74    TCQ--SCGVAGpN--LWACLqvTCPYVGCGESFA-------DHSSIH 109  

                   yeetgHplavklgtqrv<-*
                        H l v+l+t rv   
   mKIAA1003   110 AQVKKHNLTVNLTTFRV    126  

//