hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10286/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1003  ( 961 res)   mfj10286

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          237.9    1.5e-67   1
zf-UBP   Zn-finger in ubiquitin-hydrolases and other     28.7    0.00013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-UBP     1/1      75   147 ..     1    82 []    28.7  0.00013
UCH        1/1     187   729 ..     1   273 []   237.9  1.5e-67

Alignments of top-scoring domains:
zf-UBP: domain 1 of 1, from 75 to 147: score 28.7, E = 0.00013
                   *->CvstCgl.tenlWlCL..tCGqvgCGryqylgdGgngHaleHyretg
                      C   Cg+   nlW CL+ tC +vgCG+       + +H+  H     
   mKIAA1003    75    C-QSCGVaGPNLWACLqvTCPYVGCGES------FADHSSIHAQVKK 114  

                   HplavklktqstwcyacdaYvhqeddeedalDgkylvd<-*
                   H l v+l+t ++wcyac+  v +e  +      + l+    
   mKIAA1003   115 HNLTVNLTTFRVWCYACEREVFLEQRLA----VH-LAS    147  

UCH: domain 1 of 1, from 187 to 729: score 237.9, E = 1.5e-67
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                       g+tG +NlGN+CYmN++LQ+L+++ppl++++l++   ++       
   mKIAA1003   187    RGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRT------ 227  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                   ++k  l++++++L+++ ++++++s v++ +++      +++ n++f gy 
   mKIAA1003   228 DKKPALCKSYQKLISEVWHKkRPSYVVPTSLS----HGIKLVNPMFRGYA 273  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x                 
                   QqDAhEFllfLLdgLhedlnrvnkkpytepe.s.................
                   QqD +EFl+ L+d+Lhe+l+         p  +     ++ +++++++++
   mKIAA1003   274 QQDTQEFLRCLMDQLHEELKE--------PMvAavaaltdardsdssdtd 315  

                RF                                                   
                   ..................................................
                   +++++++++++++  + ++++++++++++++++++++ + +   +++ ++
   mKIAA1003   316 errdgdrspsedeflscdsssdrgegdgqgrgggsskaemellisdeagr 365  

                RF                                                   
                   ..................................................
                     +++++ ++++ + +++++++++ +++ + ++   + ++++++ +++++
   mKIAA1003   366 aisekermkdrkfswgqqrtnseqvdedadvdtamasldeqsreaqppsp 415  

                RF                                                   
                   ..................................................
                   +++++ ++++++++ + ++++++ ++ +++++++++ ++++++ ++ + +
   mKIAA1003   416 rstspcqtpepdneahirsssrpcspvhhhheghsklsssppraspvrmg 465  

                RF              xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx     
                   .............dkrpdkaaeawknhslrneslitdlFqGqles.....
                   ++   ++ + +++++r        ++++ +  s+i+d+F G++ s  ++ 
   mKIAA1003   466 psyvlkkaqvpstGGR--------RRKEQSYRSVISDVFNGSVLSlvqcl 507  

                RF                                                   
                   ..................................................
                   ++++ +++ ++ ++ + + +++++  + ++   ++ + +++ ++++ +++
   mKIAA1003   508 tcdrvsttvetfqdlslpipgkedlaklhsaiyqnvpakpgacgdsyssq 557  

                RF                                                   
                   ..................................................
                   +      +  ++   +++++   ++  + +++       ++ ++++  ++
   mKIAA1003   558 gwlafiveyirrfvvsctpswfwgpvvtledclaaffaadelkgdnmysc 607  

                RF                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ................rlkisrLPpiLiihLKRFkydgetgmnkKindkV
                   +++++ +++ + ++        LP+iL++hLKRF  +       K +  V
   mKIAA1003   608 erckklrngvkyckvlC-----LPEILCVHLKRFRHEVM--YSFKVSSHV 650  

                RF xxxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   efPleLdlssyctae....pplkYeLyaVvvHsGsslsgGHYiayikkkk
                   +fPle ++ + ++a++ +++ ++Y+L +V++H+G ++++GHYiay+  + 
   mKIAA1003   651 SFPLEGLDLRPFLAKectsQVTTYDLLSVICHHG-TAGSGHYIAYCQ-NV 698  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   knnkWykfDDekVsevseeevlersssAYiLFY<-*
                    n++Wy fDD++V+ev e  v   + +AY+LFY   
   mKIAA1003   699 INGQWYEFDDQYVTEVHETVV--QNVEAYVLFY    729  

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