hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02928/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1002  ( 1070 res)   mbh02928

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
R3H      Putative single-stranded nucleic acids-bindi    70.5    2.2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
R3H        1/1     178   255 ..     1    83 []    70.5  2.2e-16

Alignments of top-scoring domains:
R3H: domain 1 of 1, from 178 to 255: score 70.5, E = 2.2e-16
                   *->adflpllldiesyrprrreelielaleiakffvkstkesvelpPsMn
                      +d++ +l+++++ +pr+r++l++l++ei++f+ +++++ +++p  M+
   mKIAA1002   178    IDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQ-MT 223  

                   syeRkivHelaekygLeSeSeGegpkeNRrvvvskk<-*
                   sy+R++ H++a ++g+ +++ + g    + v++ k+   
   mKIAA1002   224 SYHRMLLHRVAAYFGMDHNVDQTG----KAVIINKT    255  

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