hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbj/mbj00867/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1001 ( 512 res) mbj00867 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sulfatase Sulfatase 166.2 5.5e-46 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sulfatase 1/1 22 405 .. 1 531 [] 166.2 5.5e-46 Alignments of top-scoring domains: Sulfatase: domain 1 of 1, from 22 to 405: score 166.2, E = 5.5e-46 *->ppnvvlilgESaradrrlnmglyGyprpttPfLsdklaqdeegllFs pn+v+il++++++ ++g++ + +t +L dk+a eg++F mKIAA1001 22 QPNIVIILADDMGWG---DLGANWAETKDTTNL-DKMA--SEGMRFV 62 nfysgapgTapSlfalLtglppsnlgvgvstpyqqvyakgpgydiqlprt +f+++a ++pS+++lLtg+ ++ gv+++ + v ++lp + mKIAA1001 63 DFHAAASTCSPSRASLLTGRLGLRNGVTHNFAVTSV--------GGLPVN 104 qpnlpdlLkqaGYrTnfigkwhlswysrqsvykgkktSveaflP.nlGFd +++l+++L+q GY T++igkwhl++ + ++P+ +GFd mKIAA1001 105 ETTLAEVLRQEGYVTAMIGKWHLGHH-------------GSYHPnFRGFD 141 sffdrnallelyadppdseyylg............pgggnnkgniyeefa ++f+ ++++++++ + ++y++++ + +++++ ++ g++ mKIAA1001 142 YYFG-IPYSNDMGCTDAPGYNYPpcpacpqrdglwRNPGRD--------- 181 ddlalmeCf......Ll.nl.vvaqPp.l.vsDealldkilevL.alqkn C+++ +L++nl++v+qP++l+ ++ +++++e+++++ + mKIAA1001 182 -------CYtdvalpLYeNLnIVEQPVnLsGLAQKYAERAVEFIeQASTS 224 dkPffivlhtmgsHagppiPyypdrypekfakfqptcgeaerscskeqql ++Pf++++ + + H p+ ++++ q mKIAA1001 225 GRPFLLYVGLAHMHV-PL--SVTPPLAHP------------------QRQ 253 nnYlnavaytDdligrliekLkksgkdkntlvvytSDHGpslgetstkek + Y +++++D l+g++ +k+ ++ ++ntl+ +t+D+Gp mKIAA1001 254 SLYRASLREMDSLVGQIKDKV-DHVARENTLLWFTGDNGPWA-------Q 295 k.............ggvylhgekt..nayeggyrvPlliwspdgkpakhp k + ++ ++ + + + g++t+++++egg+rvP+l ++p+ pa mKIAA1001 296 KcelagsvgpffglWQTHQGGSPTkqTTWEGGHRVPALAYWPGRVPA--- 342 idvqclkgqkikalvshiDlfpTlLdlaGikktsdvplyyadlteppsnp + ++ al s D+fpT+ laG+ mKIAA1001 343 -------NVTSTALLSLLDIFPTVIALAGA-------------------- 365 qagpkyllldgrdtlailegkkilv.n.dgyrtydgilggyssqsehdsl +p ++ dgrd l gk + + + mKIAA1001 366 -SLPPNRKFDGRDVSEVLFGKSQMGhRvL--------------------- 393 fgylkvrddlkavtlyefntraivkgweavtldpdatctevEffrllkvk mKIAA1001 - -------------------------------------------------- - pldmsftrdppeLYdlngdlgelen<-* +++n + ++ mKIAA1001 394 -------------FHPNSGAAGEYG 405 //