hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00723/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0998  ( 1333 res)   mbg00723

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TTL      Tubulin-tyrosine ligase family                 421.3   9.1e-123   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TTL        1/1     116   411 ..     1   330 []   421.3 9.1e-123

Alignments of top-scoring domains:
TTL: domain 1 of 1, from 116 to 411: score 421.3, E = 9.1e-123
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++l e      q++NhFP+sye+trKD+l+kni r+q+++g+k   f
   mKIAA0998   116    RTLSE-----AQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFK--AF 155  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lp+tf+lp++++ef + + k+++      WIvKP as+RGrG++++n+
   mKIAA0998   156 HILPQTFLLPAEYAEFCNSYSKDRG-----PWIVKPVASSRGRGVYLINN 200  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   ++qi+                +++ +V++YI +PLLid       KFD R
   mKIAA0998   201 PNQIS---------------LEENILVSRYINNPLLIDD-----FKFDVR 230  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   lYVLvts+dPL+iY+Y+egl+RFA+v Y+ +++++ + +mHLTNys++kk
   mKIAA0998   231 LYVLVTSYDPLVIYLYEEGLARFATVRYDQgSKNIRNQFMHLTNYSVNKK 280  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   s +Y+++ + + e+ g+kws ++  +yl+++g+d+ ++++ +e++iikti
   mKIAA0998   281 SGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTALMAHVEDLIIKTI 330  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   ++ae  i++a+  +v  + +cFELyGfD+++    D++lkPwLLEVN+sP
   mKIAA0998   331 ISAElaIATACKTFVPHRSSCFELYGFDVLI----DNTLKPWLLEVNLSP 376  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   sl+++ +ld ++ka +i+d +  ++ +v  d+++++   
   mKIAA0998   377 SLACDAPLDLKIKASMISDMFT-VVGFVCQDPAQRT    411  

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