hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12090/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0996  ( 804 res)   mpm12090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          25.5     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/1     190   213 ..     1    24 []    25.5   0.0013

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 1, from 190 to 213: score 25.5, E = 0.0013
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+  C+k+F +++ L++H++++H   
   mKIAA0996   190    YQCH-FCDKAFMNQAFLQSHIQRrH    213  

//