hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02401/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0994  ( 389 res)   mbh02401

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAD      Protein-arginine deiminase (PAD)               816.0   1.4e-241   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAD        1/1       1   389 []     1   688 []   816.0 1.4e-241

Alignments of top-scoring domains:
PAD: domain 1 of 1, from 1 to 389: score 816.0, E = 1.4e-241
                   *->MAqqRtVrlslekPThAVCVlGtetivDIyssaPkGaksFsvsgSpG
                                                                     
   mKIAA0994     -    ----------------------------------------------- -    

                   VkVyVvhdGpervkepaGksrWPLdpglevvlsMkaaSkelgDqKVriSY
                                                                     
   mKIAA0994     - -------------------------------------------------- -    

                   ygeqekaplarAlLYLTaVdISLdvDtgRtGkVkPakslvDKatWtWGPd
                                                   ++                
   mKIAA0994     1 --------------------------------AE---------------- 2    

                   GqGAILLVNCDRDdpkSramGDssePqsqLtDleDdkVlsleDLqDMSpM
                                                                     
   mKIAA0994     - -------------------------------------------------- -    

                   vLsTkGPddLFdgHkLVLhvsfsDsdkVrVFyatggekslsrYkhVLGPq
                                                      g              
   mKIAA0994     3 -----------------------------------G-------------- 3    

                   klSYeVerlgGeheidFYVEGLaFPDasFsGLvslhvSLLDtsneeLpEt
                                                                 +p+t
   mKIAA0994     4 ----------------------------------------------IPLT 7    

                   piFTDTVvFRvAPWIMTPNTlPPlEVYVCsvkDtHGSNedFLkavstLae
                   piFTDTV+FR+APWIMTPN+lPP++V+VC++kD    N++FLk+v++L+e
   mKIAA0994     8 PIFTDTVMFRIAPWIMTPNILPPVSVFVCCMKD----NYLFLKEVKNLVE 53   

                   KAkCkLtiCPqeENRnDRWIQDEmEfGYIqAPHKtfPVVFDSPRnRgLKD
                   K++C+L++C+q++NR+DRWIQDE+EfGYI+APHK+fPVV+DSPR+++LKD
   mKIAA0994    54 KTNCELKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDGNLKD 103  

                   FPvKriLGPDFGYVTREppfagvSgLDSFGNLEVSPPVtVrGKEYPLGRI
                   FP+K++LGPDFGYVTREp+f++v++LDSFGNLEVSPPVtV+GKEYPLGRI
   mKIAA0994   104 FPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLGRI 153  

                   LIGsSgFPkSgGRrMaqvVRDFLhAQqVQAPVELySDWLsVGHVDEFLSF
                   LIGsS FP+SgGRrM++vVRDFL+AQqVQAPVELySDWL+VGHVDEF++F
   mKIAA0994   154 LIGSS-FPLSGGRRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTF 202  

                   VPapDkKGFRLLLASPsACYqLFQEKQeeGhGEAllFeGLkgkrkrrIsI
                   +P+p+kK+FRLL+AS+sACYqLF+EKQ++GhGEA++F+GL+g++++rI+I
   mKIAA0994   203 IPIPGKKEFRLLMASTSACYQLFREKQKAGHGEAVMFKGLGGMSSKRITI 252  

                   neILSnesLrrfNayvQsCIDWNRevLKRELGLaEsDIIDIPQLFklken
                   n+ILSnesL+++N+y+Q+C+DWNR++LKREL+L+E+DIID+P+LFk++en
   mKIAA0994   253 NKILSNESLTQENQYFQRCLDWNRDILKRELALTEKDIIDLPALFKMDEN 302  

                   sRGnPkAeAFFPdMVNMlVLGKhLGIPKPFGPiINGrCCLEEKVrSLLEP
                   +    +A+AFFP+MVNM+VL+K+LGIPKPFGP+++++CCLE++Vr+LLEP
   mKIAA0994   303 H----QARAFFPNMVNMIVLDKDLGIPKPFGPQVEEECCLETHVRGLLEP 348  

                   LGLhCtFIdDflsYHklhGEVHCGTNVRRKPFAFKWWhMVP<-*
                   LGL+CtFIdD+++YHk++GEVHCGTNVRRKPFAFKWWhMVP   
   mKIAA0994   349 LGLACTFIDDISAYHKFLGEVHCGTNVRRKPFAFKWWHMVP    389  

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