hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph02462/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0992 ( 1081 res) mph02462 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 435.6 4.5e-127 5 ig Immunoglobulin domain 152.4 8e-42 4 V-set Immunoglobulin V-set domain 31.1 2.6e-05 3 C2-set_2 CD80-like C2-set immunoglobulin domain 5.0 0.18 1 Extensin_2 Extensin-like region -141.1 0.58 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- I-set 1/5 1 59 [. 1 97 [] 19.6 0.00032 ig 1/4 152 220 .. 1 65 [] 44.4 2.5e-09 C2-set_2 1/1 136 229 .. 1 101 [] 5.0 0.18 I-set 2/5 138 236 .. 1 97 [] 109.8 5.1e-29 V-set 1/3 112 236 .. 1 130 [] 15.5 0.017 Extensin_2 1/1 223 564 .. 1 385 [] -141.1 0.58 ig 2/4 713 775 .. 1 65 [] 41.4 2e-08 I-set 3/5 699 791 .. 1 97 [] 81.4 1.9e-20 V-set 2/3 700 791 .. 1 130 [] 5.4 0.17 ig 3/4 847 908 .. 1 65 [] 35.6 1.1e-06 V-set 3/3 833 922 .. 1 130 [] 10.1 0.06 I-set 4/5 833 924 .. 1 97 [] 132.6 7.2e-36 ig 4/4 946 1008 .. 1 65 [] 30.8 3.1e-05 I-set 5/5 932 1024 .. 1 97 [] 92.0 1.2e-23 Alignments of top-scoring domains: I-set: domain 1 of 5, from 1 to 59: score 19.6, E = 0.00032 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp Wf G++l + mKIAA0992 1 ---------------------------------WFCEGKELYN---- 10 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq s+ ++++++ + +tL+I +++ dD G YtC AtN++G++++sae+ ++ mKIAA0992 11 SPDVQIHCES-GELHTLVIAEAFEDDTGRYTCLATNPSGSDSTSAEVFIE 59 <-* mKIAA0992 - - ig: domain 1 of 4, from 152 to 220: score 44.4, E = 2.5e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v L C+v g p+ +v+W+r+g +++++ + ++ + + +st mKIAA0992 152 GQVVVLECRV--RGAPPLQVQWFRQGSeIQdSPDFRILQKKPRSTAE 196 t....sLtitnvtpeDggtYtCvv<-* ++ +L+i + peD+g++tC + mKIAA0992 197 PeeicTLVIAESFPEDAGIFTCSA 220 C2-set_2: domain 1 of 1, from 136 to 229: score 5.0, E = 0.18 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel ++ +++l+++ +se+++vv++C ++g+ P +++W ++g e mKIAA0992 136 LLPVFTKELQNTAASEGQVVVLECR---VRGAPP-LQVQWFRQGSEI 178 v..peekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyg +++p+ + ++ + s+ pe+ + v p + ++tC++ + mKIAA0992 179 QdsPDFRILQKKPRSTAEPEEICTLV--IAESFPE---DAGIFTCSATND 223 alrgsk<-* +++ + mKIAA0992 224 YGSVTS 229 I-set: domain 2 of 5, from 138 to 236: score 109.8, E = 5.1e-29 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+Ft+++++ ++eG+ +++eC+V+G P+ +V+Wf+ G++++ mKIAA0992 138 PVFTKELQNTAASEGQVVVLECRVRGAPPLQVQWFRQGSEIQD---- 180 sdrfkvtydg......GsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeas s+ f++ ++++++ + ++tL+I + +p+D+G+ tC AtN +G+++++ mKIAA0992 181 SPDFRILQKKprstaePEEICTLVIAESFPEDAGIFTCSATNDYGSVTST 230 aeLtVq<-* a+L ++ mKIAA0992 231 AQLVIT 236 V-set: domain 1 of 3, from 112 to 236: score 15.5, E = 0.017 *->qstvtqepprLLLASLfWp.t......................svtv +++v+q ++ +++ ++++++ + + +++ + + mKIAA0992 112 SVPVQQ-AHS--------AtSylcrpdgttmgcllpvftkelqNTAA 149 aeGgsvtLpCtysGtfddsssssgtgsvyWyrqqpp...Gekpeliiisy +eG+ v L C ++ + + +v+W+r q ++ ++++ i mKIAA0992 150 SEGQVVVLECRVR----GA----PPLQVQWFR-QGSeiqDSPDFRIL--- 187 ytyysysegngtvserfkgrvrfsgnpskgdfsLtIsnlqlsDsGtYyCa +++ r ++ p ++L I ++D G+ +C mKIAA0992 188 -----------------QKKPRSTAEPE-EICTLVIAESFPEDAGIFTCS 219 ........gggtrLtVl<-* +++ ++ + +L+++ mKIAA0992 220 atndygsvTSTAQLVIT 236 Extensin_2: domain 1 of 1, from 223 to 564: score -141.1, E = 0.58 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy v l++ s + + sY S p+ + + PPpP mKIAA0992 223 DYGSVTSTAQLVITSANNENCSYDSTGEPNSDHFQHFPPPP------ 263 kSPPPpkkpYvYsSPPPPs.yvykSPPPPkp.....yvYkSPPpP.kyvY P Y S P ++SP + ++ + ++ v mKIAA0992 264 --PILETGSYELASQKPSEiQQVNSPNLGFSmaalqMQFNTAEREtNGVH 311 kSPPpPv......ykYkSPPPPthsppPpyvykSP...PPPpkkyvykSp S +++ y kSPP Pt SP+++PPP mKIAA0992 312 PSHGVNGlingkaYGNKSPPTPT-------ALLSPtkePPPL-----LAK 349 PpptPvYkYkSPPPPp......yvYkspPpPvkkripyvYkSPPPPpPYv P P k + ++ +++ + +Pp v+ +S PP pP mKIAA0992 350 PKLDP-LKLQQLQNQVrleqeaCAWPPAPPGVPCNSSSSGSSAPPSPP-- 396 YkSpPppvkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYk pPpp + pe SP P +P s++ + + + mKIAA0992 397 -FPPPPPA--F-------PELA--ACASPVPSEP---MSALASRATAMQS 431 SPPPPkksYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyv S s+ + p +++ P + P P ++s++ +++ mKIAA0992 432 S-----GSFNYARPKQFIAAQNLGPA-----SGLPTPTSSPSSSSLPSPL 471 YkSPPPPtyvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippik. P P++ + p pP p+ +sP PP pPp pp+ + mKIAA0992 472 ---SPTPSPFGRAPGPPFVEPEAMWGPSSPSPP--------PPP-PPVFs 509 sssppPvyvYkSpPppvysPPPPyvYssPPPPvy..vynsaPvykksPPk +s Pv P + + PPPP PP P ++ +s+ + s + mKIAA0992 510 PSAAYPV------PDVFPLPPPP-----PPLPSStsHCASPARFGPSQTP 548 hhYiYs...SPPPphh<-* + + +S PPp+ mKIAA0992 549 AAFLSAllpSQPPPVA 564 ig: domain 2 of 4, from 713 to 775: score 41.4, E = 2e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +vt+tC+v g+p ++++W+++gk++ + ++++ +++ d+t + mKIAA0992 713 GMPVTFTCRV--AGNPKPKIYWFKDGKqISpKSDHYTIQRDLDGTCS 757 tsLtitnvtpeDggtYtCvv<-* L+ t+ t +D+g+Yt ++ mKIAA0992 758 --LHTTASTLDDDGNYTIMA 775 I-set: domain 3 of 5, from 699 to 791: score 81.4, E = 1.9e-20 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P F+ k+k ++ eG +++f+C+V G+P+P++ WfKdG+++s+ mKIAA0992 699 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP---K 742 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq sd++ + d +gt++L + dD G Yt+ A N+ G+++++ +L Vq mKIAA0992 743 SDHYTIQRDL-DGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 791 <-* mKIAA0992 - - V-set: domain 2 of 3, from 700 to 791: score 5.4, E = 0.17 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++ + + eG vt++C + +++ mKIAA0992 700 FFEMKL--KH----------Y-KIFEGMPVTFTCRVA---GNP---- 726 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +yW++ +g+ +++++ ++++++ mKIAA0992 727 KP-KIYWFK------------------------DGKQISPKSDHYTIQRD 751 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* + g++sL+ + +l+D G Y+ ++ ++ rL+V mKIAA0992 752 LD-GTCSLHTTASTLDDDGNYTIMaanpqgrvSCTGRLMVQ 791 ig: domain 3 of 4, from 847 to 908: score 35.6, E = 1.1e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++ C v +g p ++++W+ +gk++ ++ ++ +++++ + mKIAA0992 847 GKLCRMDCKV--SGLPTPDLSWQLDGKpIRpDSAHKMLVRENGVHS- 890 tsLtitnvtpeDggtYtCvv<-* L i +vt+ D+g+YtC + mKIAA0992 891 --LIIEPVTSRDAGIYTCIA 908 V-set: domain 3 of 3, from 833 to 922: score 10.1, E = 0.06 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + +++ p+ +tv+eG+ ++ C++s + + mKIAA0992 833 PHFLQA--PG----------DLTVQEGKLCRMDCKVS---GLP---- 860 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg ++ +++W ++ p ++ + +k vr mKIAA0992 861 TP-DLSWQLDgKPI----------------------RPDSAHKMLVR--- 884 npskgdfsLtIsnlqlsDsGtYyCa......gggtrLtVl<-* +g sL I +++ D G+Y+C +++ ++++ +L + mKIAA0992 885 --ENGVHSLIIEPVTSRDAGIYTCIatnragQNSFNLELV 922 I-set: domain 4 of 5, from 833 to 924: score 132.6, E = 7.2e-36 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+q p d++VqeG+ +r++CkV+G P+P+ sW dG+p+++ mKIAA0992 833 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPIRP---- 875 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++ +k+ +++ +g ++L+I v+++D+G+YtC+AtN+aG+ + eL V mKIAA0992 876 DSAHKMLVRE-NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFNLELVVA 924 <-* mKIAA0992 - - ig: domain 4 of 4, from 946 to 1008: score 30.8, E = 3.1e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L C+v +g p+++++W++++ +lt++++ s ++++ ++ mKIAA0992 946 GYPVRLECRV--SGVPPPQIFWKKENEsLThSTERVSMHQDNHGYIC 990 tsLtitnvtpeDggtYtCvv<-* L i+ +t+eD+g Yt + mKIAA0992 991 --LLIQGATKEDAGWYTVSA 1008 I-set: domain 5 of 5, from 932 to 1024: score 92.0, E = 1.2e-23 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F k+++ V+ G ++r+eC+V+G P+P++ W+K ++ l+ + mKIAA0992 932 PVFMEKLQNTGVADGYPVRLECRVSGVPPPQIFWKKENESLTH---S 975 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r++++ d++++++ L I++++++D+G Yt+ A+N+aG ++++a+L V+ mKIAA0992 976 TERVSMHQDNHGYIC-LLIQGATKEDAGWYTVSAKNEAGIVSCTARLDVY 1024 <-* mKIAA0992 - - //