hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02064/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0991  ( 605 res)   mph02064

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
GTP_CDC   Cell division protein                         499.4   2.7e-146   1
MMR_HSR1  GTPase of unknown function                     25.4    3.2e-05   1
Dynamin_N Dynamin family                                -44.5       0.46   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Dynamin_N   1/1     321   466 ..     1   217 []   -44.5     0.46
MMR_HSR1    1/1     319   467 ..     1   140 []    25.4  3.2e-05
GTP_CDC     1/1     315   594 ..     1   294 []   499.4 2.7e-146

Alignments of top-scoring domains:
Dynamin_N: domain 1 of 1, from 321 to 466: score -44.5, E = 0.46
                   *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges
                      I+VvG+   GKS+++n L    ++   r ++      p+        
   mKIAA0991   321    IMVVGQSGLGKSTLINTLFKSKIS---RKSV-----QPTS------- 352  

                   peaieivsipgavkveykdflhplkkfedfsevreeieketdriagknkg
                                    ++      k ++++ + + ie++  r+      
   mKIAA0991   353 -----------------EER---IPKTIEIKSITHDIEEKGVRMK----- 377  

                   isseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSva
                                                      lt +DtPG+ +   +
   mKIAA0991   378 -----------------------------------LTVIDTPGFGD---H 389  

                   vgdq..........qPeDieeqIrelteeyiskpadiI............
                    ++++  ++  +            +  e+y++++ +i ++++ ++++ + 
   mKIAA0991   390 INNEncwqpimkfiN---------DQYEKYLQEEVNINrkkripdtrvhc 430  

                   .LaVvpAn.vaLdlstssdealflarevdpkgerdktigVltKd<-*
                    L+  pA ++  +l     + +f++r+ ++ + +     V+ K+   
   mKIAA0991   431 cLYFIPATgH--SLRPL--DIEFMKRLSKVVNIV----PVIAKA    466  

MMR_HSR1: domain 1 of 1, from 319 to 467: score 25.4, E = 3.2e-05
                   *->lrvaivGrPNVGKSTLiNaLtgkkraiVsdyP......GtTrdpneg
                      + +++vG +  GKSTLiN+L ++k+++ s +P+++++   T++++ +
   mKIAA0991   319    FNIMVVGQSGLGKSTLINTLFKSKISRKSVQPtseeriPKTIEIKSI 365  

                   rvel....dgrqiilvDTPGiiegaskgeg....................
                   + ++++++   +++++DTPG+  g++ + ++  ++  +  +++ ++  ++
   mKIAA0991   366 THDIeekgVRMKLTVIDTPGF--GDHINNEncwqpimkfindqyekylqe 413  

                   ..elgertleaieeaDlilfVvDase.gltedytieeDleiadllydeer
                   +  ++++ +    +++++l+ + a+ + l      + D e+ ++l     
   mKIAA0991   414 evNINRKKRIPDTRVHCCLYFIPATGhSLR-----PLDIEFMKRL----- 453  

                   ernleltLqelekkgkPvilvlNKiD<-*
                              +  +  ++ v+ K+D   
   mKIAA0991   454 ----------SKVVN--IVPVIAKAD    467  

GTP_CDC: domain 1 of 1, from 315 to 594: score 499.4, E = 2.7e-146
                   *->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgpae
                       Gf+F++MVVG+SGLGK+TlINTLF +++ +          +++ +e
   mKIAA0991   315    QGFEFNIMVVGQSGLGKSTLINTLFKSKISRK-------SVQPTSEE 354  

                   tkikkTveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
                    +i kT eIk + ++ iEE+Gv+ +LTViDTPGFGD i+N++cW+pI ++
   mKIAA0991   355 -RIPKTIEIK-SITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKF 402  

                   IdeQheqYLrqEsrinRetkivDnRVHcCLYFIsPtGhgLkpLDvefMKk
                   I++Q+e YL++E +inR ++i D+RVHcCLYFI  tGh L+pLD+efMK+
   mKIAA0991   403 INDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKR 452  

                   LsekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPPdeeed
                   Ls+ VN++PVIAKADtLT++E+  fK+rI +++   +I++Y+     e d
   mKIAA0991   453 LSKVVNIVPVIAKADTLTLEERVYFKQRITADLLSNGIDVYP---QKEFD 499  

                   eGDEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEVEN
                   e D+e +  +++ ++ iPFA+VGS+ e++  +G+++ GRk++WG++EVEN
   mKIAA0991   500 E-DAEDRLVNEKFREMIPFAVVGSDHEYQV-NGKRILGRKTKWGTIEVEN 547  

                   psHCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<-*
                    +HC+F +LR+lLirtH+q  k++T++i+ E YR ++L +++++  n   
   mKIAA0991   548 TTHCEFAYLRDLLIRTHMQNIKDITSNIHFEAYRVKRLNEGNSAMAN    594  

//