hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00916/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0990  ( 821 res)   mpg00916

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CHGN     Chondroitin N-acetylgalactosaminyltransferas  1083.9          0   1
Fringe   Fringe-like                                    -90.6       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Fringe     1/1      97   342 ..     1   253 []   -90.6     0.12
CHGN       1/1     258   797 ..     1   683 []  1083.9        0

Alignments of top-scoring domains:
Fringe: domain 1 of 1, from 97 to 342: score -90.6, E = 0.12
                   *->evlelkD...vFIAVKTTrkyHktRLeLLlqTWisrareqT.FiFTD
                       +  ++D++ +F+ V T +ky +tR     +TW    + + +F+   
   mKIAA0990    97    AEGVPRDrnfLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVeFFSSE 143  

                   geDkelqekagghlinTnCSavhtrqALcCKMavEy..DkFleSgkKWFC
                   g D          l     S    ++     M   y +D +l     WF 
   mKIAA0990   144 GSDTSIPIPVV-PLRGVDDSYPPQKKSF---MMLKYmhDHYLD-KYEWFM 188  

                   HvDDDNYVNlraLlkLLsafshsqDvYlGrPSLdhPieatervkedgtnk
                     DDD Y+   +L   L++  +s+ ++lG+  L    e      e g   
   mKIAA0990   189 RADDDVYIKGDRLESFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGE-- 236  

                   svkFWFATGGAGFCisRgLALKMsPwASgG.kFistaervRLPDDcTiGY
                        F  GG G  +sR    +M+P  +   + + t        D+ +G 
   mKIAA0990   237 ----NFCMGGPGVILSREVLRRMAPHIGKClREMYTTH-----EDVEVGR 277  

                   IiEglLgvkLlhs....plFHSHLEn.....LqrlrteslleQVtLSYGg
                    +    gv+   s + ++lF    E+++++ +  l + +++  +tL    
   mKIAA0990   278 CVRRFAGVQCVWSyemqQLFYENYEQnkkgyIRDLHSSKIHRAITL--HP 325  

                   penkrNVvkvkGpFsleeDPtR<-*
                    +n+    +++  + l    +R   
   mKIAA0990   326 NKNPPYQYRLHS-YML----SR    342  

CHGN: domain 1 of 1, from 258 to 797: score 1083.9, E = 0
                   *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle
                      h++kClr+m+t++eDv e+GRCvr+++Gv      ++v++yemq+l+
   mKIAA0990   258    HIGKCLREMYTTHEDV-EVGRCVRRFAGV------QCVWSYEMQQLF 297  

                   lsnseaekesyierlkspafksAltvhPvknpadmyrLHkyflrlelera
                   ++n+e++k++yi++l+s+++++A+t+hP+knp+++yrLH+y+l++++ ++
   mKIAA0990   298 YENYEQNKKGYIRDLHSSKIHRAITLHPNKNPPYQYRLHSYMLSRKIAEL 347  

                   reeiiqLeaeisrlaeysasegirkisWplgiPpSFmpstPnnRyevltW
                   r+++iqL++ei+++++ys +e i k++++lgiPpSFm+++ ++R+e+l+W
   mKIAA0990   348 RHRTIQLHREIVLMSKYSSTE-IQKEDLQLGIPPSFMRFQARQREEILEW 396  

                   eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl
                   e++Tg++l+s+ Dg  ++Pr+++d+a+R++l+D+v+q++e++N+na++r+
   mKIAA0990   397 EFLTGKYLYSATDG--QPPRRGMDSAQREALDDIVMQVMEMINANAKTRG 444  

                   RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE
                   R+               ++f+++q+GYRR++P++G++Y+LDLlL      
   mKIAA0990   445 RI---------------IDFKEIQYGYRRVNPMYGAEYILDLLL------ 473  

                   mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqivEHEELDAqp
                              l+++h+++k++++vrR+ay+++++s+ q+vEHEELDAq+
   mKIAA0990   474 -----------LYKKHKGKKMTVPVRRHAYLQQTFSKMQFVEHEELDAQE 512  

                   spyvteatasGaLSFLSNSLKKLVPFqLPGSKsehkePKDKrihvllPLA
                   ++ +++++ sG+LSFLSNSLKKLV FqLPGSK ehkePK+K+i++l+PL 
   mKIAA0990   513 LADRINQD-SGSLSFLSNSLKKLVAFQLPGSKTEHKEPKEKKINILIPL- 560  

                   legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk
                    +gr+d+++rF+++f+k+CL +pn   +v+L++ll++++++++++     
   mKIAA0990   561 -SGRFDMFVRFMGNFEKTCL-IPNL--NVKLVILLFNSDSNPDKA----- 601  

                   avKaeaaELerDYRykslpgariawlsVsPALseefsrpvDPqSWLLHAS
                       +++EL+rDYR k +p+a++++l+Vs    + fsr++          
   mKIAA0990   602 ----KQVELMRDYRVK-YPKADMQVLPVS----GGFSRAL---------- 632  

                   mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG
                           aL++g++++++   ++Llf++dVd+vft++FL+RcR+NT+lG
   mKIAA0990   633 --------ALEVGSSQFNN---ESLLFFCDVDLVFTAEFLQRCRANTVLG 671  

                   wQvYFPvvFseYnPaivymEmTEKEEketPteqareaALSelqsgvdPse
                   +Q+YFP++Fs+Y+P+ivy                         sg++Ps+
   mKIAA0990   672 QQIYFPIIFSQYDPKIVY-------------------------SGKVPSD 696  

                   gdtlvvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIeG
                    ++++++++tG+++++g+g+tc+Yk+D+v+         VgGfd ++I+G
   mKIAA0990   697 -NHFAFTQKTGFWRNYGFGITCIYKGDLVR---------VGGFD-VSIQG 735  

                   WGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLvF
                   WGlEdvDLf+k++++G                     l+++R++E+g+v 
   mKIAA0990   736 WGLEDVDLFNKVVQAG---------------------LKTFRSQEVGVV- 763  

                   GhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-*
                    h++hp+ Cdpn Ld++qy++Cl+Ska++ +S++QL   
   mKIAA0990   764 -HIHHPVVCDPN-LDPKQYKMCLGSKASTFGSTQQL    797  

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