hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfk/mfk00358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0987  ( 851 res)   mfk00358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                             15.9     0.0019   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1       1   108 [.     1   232 []    15.9   0.0019

Alignments of top-scoring domains:
B41: domain 1 of 1, from 1 to 108: score 15.9, E = 0.0019
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                                                                     
   mKIAA0987     -    ----------------------------------------------- -    

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                                             +                       
   mKIAA0987     1 -------------------------AQ----------------------- 2    

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                      l+eD+try +l+lQ+rddi+sGrlpc+ + +++lL+++ +q+e+Gdy
   mKIAA0987     3 ---LSEDITRY-YLCLQLRDDIVSGRLPCS-FVTLALLGSYTVQSELGDY 47   

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   dp         ++   ++s++rf P+                +ke+++++
   mKIAA0987    48 DPD--------ECGNDYISEFRFAPNH---------------TKELEDKV 74   

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                    elhk h+g++p+ea++++Le+a++L  +YGv+l+   
   mKIAA0987    75 IELHKSHRGMTPAEAEMHFLENAKKLS-MYGVDLH    108  

//