hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfk/mfk00358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0987  ( 851 res)   mfk00358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAB      SAB domain                                     146.5    4.5e-40   1
4_1_CTD  4.1 protein C-terminal domain (CTD)            144.0    2.6e-39   1
Band_41  FERM domain (Band 4.1 family)                   86.3    6.3e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Band_41    1/1       1   108 [.     1   210 []    86.3  6.3e-22
SAB        1/1     494   561 ..     1    72 []   146.5  4.5e-40
4_1_CTD    1/1     766   851 .]     1   114 []   144.0  2.6e-39

Alignments of top-scoring domains:
Band_41: domain 1 of 1, from 1 to 108: score 86.3, E = 6.3e-22
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                                                                     
   mKIAA0987     -    ----------------------------------------------- -    

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                                     +Q                        L ++iT
   mKIAA0987     1 ------------------AQ------------------------LSEDIT 8    

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   ry+++LQ+++dI++GrlpC+f t++LL+SY+VQse+GDY++ + + +   
   mKIAA0987     9 RYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGND--- 55   

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                     Y s ++++P    n     ++++E+k+ elHk+HrGm+p+eAe+ +L+
   mKIAA0987    56 --YISEFRFAP----N--H--TKELEDKVIELHKSHRGMTPAEAEMHFLE 95   

                   iArdLemYGVdff<-*
                   +A++L+mYGVd++   
   mKIAA0987    96 NAKKLSMYGVDLH    108  

SAB: domain 1 of 1, from 494 to 561: score 146.5, E = 4.5e-40
                   *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE
                      ++++e++++es+++++++ k+++LDKtQDel+KHq++IsELKRtF+E
   mKIAA0987   494    AADGETSATESDQEEDAEIKAQDLDKTQDELMKHQTNISELKRTFLE 540  

                   snStpeprpnEWEREKRLsThSPvr<-*
                   + St+++++nEWE  KRLsT SPvr   
   mKIAA0987   541 T-STETALTNEWE--KRLST-SPVR    561  

4_1_CTD: domain 1 of 1, from 766 to 851: score 144.0, E = 2.6e-39
                   *->keeistksVpivnrevkTiTYesaqvDngadldpGvLltaqtiTsEt
                      k eistk+Vp+v++e+kTiTYes+qvD+gadl+pGvL++aqtiTsEt
   mKIAA0987   766    KLEISTKEVPVVHTETKTITYESSQVDPGADLEPGVLMSAQTITSET 812  

                   lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq
                   +SttTTThiTKTvkgGisETriEkrivItgD+DiDhDq+           
   mKIAA0987   813 TSTTTTTHITKTVKGGISETRIEKRIVITGDADIDHDQE----------- 851  

                   hPDMsVtKvvVhqeTei<-*
                                       
   mKIAA0987     - -----------------    -    

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