hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp09156/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0986 ( 921 res) mbp09156 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF1162 Protein of unknown function (DUF1162) 478.4 5.6e-140 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1162 1/1 44 321 .. 1 348 [] 478.4 5.6e-140 Alignments of top-scoring domains: DUF1162: domain 1 of 1, from 44 to 321: score 478.4, E = 5.6e-140 *->kvdlLdLsvhvrkipGtaqalvvsifsPYwiiNkTgrmLiyksedtk k+d Ld+++h+++++G+ +vv+++sPYw++NkT rmL+yk+++++ mKIAA0986 44 KSD-LDIAIHMTYNTGQ---TVVAFHSPYWMVNKTNRMLQYKADGIH 86 veaagqieeheeaedrhvkPPEFGlmFSFkdenSWffkknkvrlGkarid ++ +++++ +kP ++FSF++++ ff++nkv+l +++ mKIAA0986 87 RK--------HPPNY--TKP----VLFSFQPNH--FFNNNKVQL---MVT 117 nseWSekfSlDtvGsvgevecrakhenknqeYnlGvsikessGkfslTki +se+S++fS+DtvGs+g+++c++ ++eY++Gv+i++ss f++T+i mKIAA0986 118 DSELSDQFSIDTVGSHGAIRCKGL----KMEYQVGVTINLSS--FNITRI 161 VTftPRyivkNkskvtleFmqvrEegFqddsdkdkilhipseecipltWp VTf+P+y++kNksk++++ v+Eeg sdk +l++++e++ip+ Wp mKIAA0986 162 VTFIPFYMIKNKSKYHIS---VAEEG----SDK--WLSLDLEQSIPF-WP 201 rniqkrkLllvrvseckhwsspfFyikevgstllklrksDDddedeeegg +n++ ++Ll ++v+++++++++++++k+++++ll+l ++e gg mKIAA0986 202 ENAS-NILL-IQVERSEDPPKRIYFNKQDNCILLRL--------NNELGG 241 irveVnlteatffItftdyhtgpwPfrIkNhttvdilTYyQkgskpaseg i++eVnl+e++++Itf+dyh+g+++f+++Nht++d+++Y+Q++ + mKIAA0986 242 IIAEVNLAEHSTVITFSDYHDGAATFLLINHTKSDPVQYNQSSLGE---- 287 kkddavderflrsfksietvlpPgseadYaWDdPtgpsKkLvlevgknit ie++lpPg++++Y+W+dP+g++ kL++++g++++ mKIAA0986 288 ----------------IEDSLPPGKAVYYTWADPVGSR-KLKWSCGQSYG 320 e<-* e mKIAA0986 321 E 321 //