hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp05185/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0985  ( 684 res)   mbp05185

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     168.9    5.1e-46   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     398   503 ..     1    92 []    89.1  5.2e-22
C2         2/2     556   670 ..     1    92 []    79.8  3.3e-19

Alignments of top-scoring domains:
C2: domain 1 of 2, from 398 to 503: score 89.1, E = 5.2e-22
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                       L ++ii+A++L++ ++++  DPYVk++  ++ +++++ +Tk+ ++t
   mKIAA0985   398    NLQCTIIRAKGLKpmdsnglaDPYVKLHllpgasksnklRTKTLRNT 444  

                   lsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvt
                       NPvWnE   t++++ + +++ ++++L+i+V+D+++ ++++fiG+++
   mKIAA0985   445 R---NPVWNE---TLQYHGITeedmqrKtLRISVCDEdkfghnEFIGETR 488  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   ++              l++l+ ++r++ +   
   mKIAA0985   489 FS--------------LKKLKaNQRKnFN    503  

C2: domain 2 of 2, from 556 to 670: score 79.8, E = 3.3e-19
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                       L v ii++ +L   + ++ +DP+Vk++ +++ +++ ++kT ++kkt
   mKIAA0985   556    GLIVGIIRCVHLAamdangysDPFVKLWlkpdmgkkakhKTQIKKKT 602  

                   lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti
                   l   NP++nE   +F++++ +++  +++L i+V+D++ ++++d iG +++
   mKIAA0985   603 L---NPEFNE---EFFYDIKHsdlakKsLDISVWDYdigksnDYIGGCQL 646  

                   ppnnahqhsadg..lihlsell.ggrh.kl<-*
                   +      +sa g++l h+ e l++  ++ +   
   mKIAA0985   647 G------ISAKGerLKHWYECLkNKDKkIE    670  

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