hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21374/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0984  ( 816 res)   mbg21374

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   115.8    4.7e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     134   368 ..     1   310 []   115.8  4.7e-30

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 134 to 368: score 115.8, E = 4.7e-30
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                       ++G+p ++R +VW  L++++  +                       
   mKIAA0984   134    LSTGIPKEWRRKVWLTLADHYLHS----------------------- 157  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                        +++ ++ t ++ +  d                        d+   
   mKIAA0984   158 -IAIDWDKTMRFTFNERSNPD------------------------DDSMG 182  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                    qI kDl+RT     + q+               ++ +  L rvL+aY++
   mKIAA0984   183 IQIVKDLHRTGCSSYCGQEA--------------EQDRVVLKRVLLAYAR 218  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                    n++  vgYcQG n laa++L+vm+  +E dA   + +L++ +lp+ +f 
   mKIAA0984   219 WNKN--VGYCQGFNILAALILEVME-GNEGDALKIMIYLIDKVLPESYF- 264  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqd.kq.skkkhvd
                           +l+ l+ d+ v+++ll+  lPeL++HL+ + +  ++      
   mKIAA0984   265 ------VNNLRALSVDMAVFRDLLRLKLPELSQHLDTLQrTAnK------ 302  

                   kleid.......pslyalrWfLtlFarelPledvlRiwDvlfaellrlgs
                     e+ ++ +++ + +++++WfLtlFa+ lP ++vl+iwD +f+e    gs
   mKIAA0984   303 --ESGggyepplTNVFTMQWFLTLFATCLPNHTVLKIWDSVFFE----GS 346  

                   eflfkialaiLklnedkllkld<-*
                   e++++++lai  ++ +++  +    
   mKIAA0984   347 EIILRVSLAIWAKLGEQIECCE    368  

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