hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm10083/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0982 ( 504 res) mpm10083 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 168.5 6.8e-46 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/6 153 193 .. 1 46 [] 24.3 0.017 WD40 2/6 196 235 .. 1 46 [] 42.1 7.5e-08 WD40 3/6 280 319 .. 1 46 [] 27.5 0.0019 WD40 4/6 322 361 .. 1 46 [] 41.9 8.4e-08 WD40 5/6 366 404 .. 1 46 [] 36.3 4e-06 WD40 6/6 453 494 .. 1 46 [] 16.8 1.1 Alignments of top-scoring domains: WD40: domain 1 of 6, from 153 to 193: score 24.3, E = 0.017 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +l++++ gH++ ++++v++ + p +l ++s D+t lW mKIAA0982 153 IcQLVKEYIGHRD--GIWDVSVTRTQ-----PIVLGTASaDHTALLW 192 d<-* + mKIAA0982 193 S 193 WD40: domain 2 of 6, from 196 to 235: score 42.1, E = 7.5e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+k+l ++ gH g +V+s++f+p+ +l +++s+D t ++W mKIAA0982 196 TgKCLVKYAGHVG--SVNSIKFHPSE------QLALTASgDQTAHIW 234 d<-* mKIAA0982 235 R 235 WD40: domain 3 of 6, from 280 to 319: score 27.5, E = 0.0019 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +l +lk H+g V + ++ g ++++++s+D+t l+ mKIAA0982 280 VrVPLTSLKSHQG--VVIAADWLVGG------KQVVTASwDRTANLY 318 d<-* d mKIAA0982 319 D 319 WD40: domain 4 of 6, from 322 to 361: score 41.9, E = 8.4e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++l+++l+gH++ + t+++ +p+ +l++++s+D t rlW mKIAA0982 322 TsELVHSLTGHDQ--ELTHCCTHPTQ------RLVVTSSrDTTFRLW 360 d<-* d mKIAA0982 361 D 361 WD40: domain 5 of 6, from 366 to 404: score 36.3, E = 4e-06 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + +++gHt+ Vts f + ++sgs+D+t+++W mKIAA0982 366 SiHSVNVFQGHTD--TVTSAVFTVG-------DNVVSGSdDRTVKVW 403 d<-* d mKIAA0982 404 D 404 WD40: domain 6 of 6, from 453 to 494: score 16.8, E = 1.1 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++ +gH+ V++ a+s d+ + l++++ D++ W mKIAA0982 453 ArLPRSSRQGHRR--MVCCSAWSEDH----PICNLFTCGfDRQAIGW 493 d<-* + mKIAA0982 494 N 494 //