hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm12376/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0980 ( 1292 res) mpm12376 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EFh EF-hand, calcium binding motif 38.8 7.1e-07 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EFh 1/3 28 56 .. 1 29 [] 9.1 12 EFh 2/3 217 245 .. 1 29 [] 2.5 79 EFh 3/3 254 282 .. 1 29 [] 27.1 0.0025 Alignments of top-scoring domains: EFh: domain 1 of 3, from 28 to 56: score 9.1, E = 12 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* l+++ + D+ g G++d eE+ +l+++l mKIAA0980 28 RLRDVYSSCDTTGTGFLDQEELTQLCTKL 56 EFh: domain 2 of 3, from 217 to 245: score 2.5, E = 79 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* ++ ++ e+ +G ++ +E+ ++++s+ mKIAA0980 217 LVQGIWHELGIGSSGHLNEQELAVVCRSI 245 EFh: domain 3 of 3, from 254 to 282: score 27.1, E = 0.0025 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* el+e+F+++D+DgdG++++ Ef+ +l mKIAA0980 254 ELEELFSKLDQDGDGRVSLAEFQLGLFGH 282 //