hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12376/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0980  ( 1292 res)   mpm12376

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
efhand   EF hand                                         51.2    2.2e-11   3
Filament Intermediate filament protein                 -186.4       0.46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/3      28    56 ..     1    29 []    17.8     0.26
efhand     2/3     217   245 ..     1    29 []     3.7       48
efhand     3/3     254   282 ..     1    29 []    29.6  7.1e-05
Filament   1/1     946  1185 ..     1   359 []  -186.4     0.46

Alignments of top-scoring domains:
efhand: domain 1 of 3, from 28 to 56: score 17.8, E = 0.26
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +l+++ +  D+ g G+++ eE+ ++++kl   
   mKIAA0980    28    RLRDVYSSCDTTGTGFLDQEELTQLCTKL    56   

efhand: domain 2 of 3, from 217 to 245: score 3.7, E = 48
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++ ++ e+    +G ++ +E+  +++++   
   mKIAA0980   217    LVQGIWHELGIGSSGHLNEQELAVVCRSI    245  

efhand: domain 3 of 3, from 254 to 282: score 29.6, E = 7.1e-05
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      el+e+F+++D+DgDG++s+ Ef+ +l      
   mKIAA0980   254    ELEELFSKLDQDGDGRVSLAEFQLGLFGH    282  

Filament: domain 1 of 1, from 946 to 1185: score -186.4, E = 0.46
                   *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa
                      +E   m                 E + k+  +k+ +l+++       
   mKIAA0980   946    QEATVMPAMS-------------ESEMKDVKTKLLQLEDVVR----- 974  

                   svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed
                   ++ + +s      e  R ++ +l+ e+  l +++++ +++le+ + K+e 
   mKIAA0980   975 ALEKADS-----RESYRAELQRLSEENLVLKSDLGKIQLELETSESKNEV 1019 

                   KeDLaaQnqlkdlEialntkeaeLaTaLeRqeaEndlvgLRaQiAklEsl
                                 +++                  +++ L          
   mKIAA0980  1020 --------------QRQ------------------EIEVL---------- 1027 

                   aaRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvkeLqaqiqdtg.
                     ++d ++a+    DLE        El  + + +  E+++L  ++ +  +
   mKIAA0980  1028 --KRDKEQAC---CDLE--------ELSTQTQKYKDEMSQLNCRVLQLEg 1064 

                   .....qvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaEewYk
                   ++++ +++ E + +                     +i   ++        
   mKIAA0980  1065 epsglHTQKEENHG---------------------AIQVLMK-------- 1085 

                   sKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqnasLEr
                    Klee+    +++g+++++ K E+   +   Q L+   ++l    +    
   mKIAA0980  1086 -KLEEAGCREEQQGDQIQNLKIELERVNEECQYLRLSQAELTESLEESRG 1134 

                   qlaElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLLdVKla
                   ql  ++ r+ea+++q+ +  ++l+e++ ql    ar  +E+Q+LL+VK  
   mKIAA0980  1135 QLYSVQLRLEAAQSQHGRIVQRLQEQMSQL-VPGAR-VAELQHLLNVKE- 1181 

                   LDiEIATYRKLLEGEEsR<-*
                                 EE R   
   mKIAA0980  1182 --------------EEAR    1185 

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