hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbx/mbx00002/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0979  ( 1191 res)   mbx00002

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     24.3     0.0029   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/4      13    48 ..     1    36 []     0.4  2.2e+02
HEAT       2/4      90   126 ..     1    36 []     1.5  1.5e+02
HEAT       3/4     128   164 ..     1    36 []    18.3     0.18
HEAT       4/4     408   444 ..     1    36 []     4.4       60

Alignments of top-scoring domains:
HEAT: domain 1 of 4, from 13 to 48: score 0.4, E = 2.2e+02
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        ll ++lp l   l+++d e R+++++ L+++       
   mKIAA0979    13    HlLL-SVLPQLEFKLKSNDNEERLQVVKLLAKMFGAK    48   

HEAT: domain 2 of 4, from 90 to 126: score 1.5, E = 1.5e+02
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       +l ++l + l    +Dp++ +R  ++ ++++ a++    
   mKIAA0979    90    PdLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKD    126  

HEAT: domain 3 of 4, from 128 to 164: score 18.3, E = 0.18
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        + d+ll+++ +   D+ ++VR+ A   L+++++++   
   mKIAA0979   128    LlVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKY    164  

HEAT: domain 4 of 4, from 408 to 444: score 4.4, E = 60
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + +  e ++ ll +l+ +d++V eaA++ + +  +++   
   mKIAA0979   408    SfHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKI    444  

//