hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12230/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0976  ( 470 res)   mfj12230

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LamNT    Laminin N-terminal domain (domain VI)           75.4    7.2e-18   1
EGF_Lam  Laminin-type epidermal growth factor-like do    28.5    0.00092   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LamNT      1/1      91   327 ..     1   282 []    75.4  7.2e-18
EGF_Lam    1/1     329   386 ..     1    42 []    28.5  0.00092

Alignments of top-scoring domains:
LamNT: domain 1 of 1, from 91 to 327: score 75.4, E = 7.2e-18
                   *->agrprrCyPefvNlAfgRkrpvtAtsTCGeqkrprPErYCklvghta
                       +   ++ P+ +              TCG +    PE +C       
   mKIAA0976    91    KYLKVKLDPPDI--------------TCGDP----PESFCAMG---- 115  

                   etdliWsllekprteqgkkCdlCDarqptkedprrsHpasnltDlnnpnn
                             +++  ++     CDa +p     +++Hp++++ D+ + + 
   mKIAA0976   116 ---------NPYMCNNE-----CDASTP-----ELAHPPELMFDFEGRHP 146  

                   ptWWQSeplsnGpqyn.nVnLTLdLgkeFevt.YVilkFcPNSPRPesla
                    t WQS + +++p+ + +Vn+TL+  k  e+t+ + ++F   S RP + +
   mKIAA0976   147 STFWQSATWKEYPK-PlQVNITLSWSKTIELTdNIVITFE--SGRP-DQM 192  

                   ilerStDfGkTWqPwQyySsqdaeCrrtFGrpprgaitkggneq..eviC
                   ile+S D+G+TWqP+Qyy+++   C   F ++p       + ++  e iC
   mKIAA0976   193 ILEKSLDYGRTWQPYQYYATD---CLHAFHMDPKSVKDL-SQHTvlEIIC 238  

                   tseysdisPlegGeiaf.............slLegRPsaedfdnSpvLQe
                   t eys    +++ +i+  + +++     +++l +  +   ++d+  +L++
   mKIAA0976   239 TEEYSTG-YSTNSKIIHfeikdrfaffagpRLRNMASLYGQLDTTKKLRD 287  

                   wvtATdiRvrltRLntplgddlmdvnskeleerDpevtrrYyYaIsDlaV
                   + t Td+R+rl+R++    ++ +          D+  + rY+YaIsD+ V
   mKIAA0976   288 FFTVTDLRIRLLRPAV---GEIFV---------DELHLARYFYAISDIKV 325  

                   GG<-*
                   +G   
   mKIAA0976   326 RG    327  

EGF_Lam: domain 1 of 1, from 329 to 386: score 28.5, E = 0.00092
                   *->CdCnlpppvG..Cdp...tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn    + ++C ++++   C+ C +nttG + C   +C+ +y ++
   mKIAA0976   329    CKCN---LHAtsCLYdnsKLTCE-CEHNTTG-PDCG--KCKKNYQgr 368  

                   ................gC<-*
                   + ++++  + ++++ ++C   
   mKIAA0976   369 pwspgsylpipkgtanTC    386  

//