hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12230/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0976  ( 470 res)   mfj12230

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Laminin_N   Laminin N-terminal (Domain VI)               37.3    1.3e-10   1
Laminin_EGF Laminin EGF-like (Domains III and V)         33.4    5.3e-06   1
EGF_2       EGF-like domain                              19.3      0.092   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Laminin_N     1/1      82   327 ..     1   264 []    37.3  1.3e-10
EGF_2         1/2     329   358 ..     1    37 []    -0.4       24
Laminin_EGF   1/1     329   373 ..     1    59 []    33.4  5.3e-06
EGF_2         2/2     398   428 ..     1    37 []    27.8  0.00025

Alignments of top-scoring domains:
Laminin_N: domain 1 of 1, from 82 to 327: score 37.3, E = 1.3e-10
                   *->CyPAtgNLainradrls.atsTCGlhsPEeyCilshlqpGRPVrdKk
                      C P+  +    ++ +l +   TCG + PE +C               
   mKIAA0976    82    CQPESTDMTKYLKVKLDpPDITCGDP-PESFCAMGNPYM-------- 119  

                   Cfl.CDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYp
                   C  +CD+   +++    + Hp++   d        t WQS      ++Yp
   mKIAA0976   120 CNNeCDAS--TPE----LAHPPELMFDFEGRHP-STFWQSA---TWKEYP 159  

                   n..nVTitLDLeaeFhiT.YvIikFkNtfRPEaamiieRSsDfGktWipY
                    +  V+itL   +    T+ + i+F  + RP   mi+e S+D G+tW pY
   mKIAA0976   160 KplQVNITLSWSKTIELTdNIVITFE-SGRP-DQMILEKSLDYGRTWQPY 207  

                   qYYaydDsECeatYpgiprrp....irtgraeddvlCTSrYSdiePlteG
                   qYYa d   C+  +   p   ++ +  t   + +++CT +YS    +t+ 
   mKIAA0976   208 QYYATD---CLHAFHMDPKSVkdlsQHT---VLEIICTEEYSTGY-STNS 250  

                   EViFsvLeGR......Psadif.......DpYSprlQewlkaTniRitLt
                    +i   +  R     +P   +  +  ++ D    +l  + ++T++Ri+L 
   mKIAA0976   251 KIIHFEIKDRfaffagPRLRNMaslygqlDT-TKKLRDFFTVTDLRIRL- 298  

                   RLhTLGDnLldsSHRelkeLdpevlekYYYAIsDivVGG<-*
                    L+    + +          d   l +Y+YAIsDi V+G   
   mKIAA0976   299 -LRPAVGEIFV---------DELHLARYFYAISDIKVRG    327  

EGF_2: domain 1 of 2, from 329 to 358: score -0.4, E = 24
                   *->C.CngshGt.CvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+Cn  h t+C  +n  +t    C+C+       +G+dC   
   mKIAA0976   329    CkCNL-HATsCLYDNSKLT----CECEHN----TTGPDC    358  

Laminin_EGF: domain 1 of 1, from 329 to 373: score 33.4, E = 5.3e-06
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C Cn+h+     +C ++d+    +   C  C +n+tG++C  Ck +y
   mKIAA0976   329    CKCNLHA----TSC-LYDN----SKLTCE-CEHNTTGPDCGKCKKNY 365  

                   yglpsgdpgqgC<-*
                    g+p+ +pg      
   mKIAA0976   366 QGRPW-SPG---    373  

EGF_2: domain 2 of 2, from 398 to 428: score 27.8, E = 0.00025
                   *->C......CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+++  +C++ +GtC ++        +C C++     y+G  C   
   mKIAA0976   398    CdnellhCQN-GGTCQNN-------VRCACPDA----YTGILC    428  

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