hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00610/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0970  ( 622 res)   mpg00610

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FN3      Fibronectin type 3 domain                      157.1    1.8e-42   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FN3        1/5      86   168 ..     1    69 []    39.3  5.3e-07
FN3        2/5     183   262 ..     1    69 []    41.3  1.3e-07
FN3        3/5     288   361 ..     1    69 []    32.7  5.1e-05
FN3        4/5     375   456 ..     1    69 []    32.1  7.6e-05
FN3        5/5     471   551 ..     1    69 []    11.8      9.3

Alignments of top-scoring domains:
FN3: domain 1 of 5, from 86 to 168: score 39.3, E = 5.3e-07
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr..
                      Pgp      +r+    +        ++l+W pP  +++++i  Y ++
   mKIAA0970    86    PGPCLP---PRLQGRPKAK-----EIQLRWGPPqvdggspISCYAve 124  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                    ++ ++++++++ +++++++t+  L Pg    ++Y+fr+rA n+   G g
   mKIAA0970   125 mtpadkdeprdvyqgseveCTVGSLLPG----KTYSFRLRAANR--IGFG 168  

                   <-*
                      
   mKIAA0970     -     -    

FN3: domain 2 of 5, from 183 to 262: score 41.3, E = 1.3e-07
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+  +    ++vt  ++t       +++ We P +++ ++++Yr ++
   mKIAA0970   183    PDQCRP---PQVTCRSAT------CAQVNWEIPlsngtdVTEYRlew 220  

                   .................ytltgLkPgaepwteYefrVrAvngndaGeg<-
                   ++++++ +    +++ ++ l+gL+P     t+Y  rV+A +   +G g  
   mKIAA0970   221 ggvegsmqmcycgpglsCELKGLSPA----TTYYCRVQAMSV--VGAG   262  

                   *
                    
   mKIAA0970     -   -    

FN3: domain 3 of 5, from 288 to 361: score 32.7, E = 5.1e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                       +  +    ++ +   st       + +sW++P++++++i+ Y+ + 
   mKIAA0970   288    DDDIEY---PHYS--PST------CLAISWKEPydhgseILAYSidl 323  

                   .............ytltgLkPgaepwteYefrVrAvngndaGeg<-*
                   +++++ ++++ ++y+++ L+P+    t+Y++r++A n+   G g   
   mKIAA0970   324 gdkqpltvgkmtsYIIDSLQPD----TTYRIRIQALNS--LGAG    361  

FN3: domain 4 of 5, from 375 to 456: score 32.1, E = 7.6e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P+ P++   l+ ++ +         + l+W +  ++  + + v+Y+ 
   mKIAA0970   375    PPDPPR---LECVAFNHQ------NLKLKWGEGtpktlstdAVQYHl 412  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                   + ++++++ ++  +++  +y++  L++     t Y+f ++A n+  aGeg
   mKIAA0970   413 qmedrngrfvslyrgpchtYKVQRLSES----TSYKFCIQACNE--AGEG 456  

                   <-*
                      
   mKIAA0970     -     -    

FN3: domain 5 of 5, from 471 to 551: score 11.8, E = 9.3
                   *->PgpPsnptelrvtdvtststsdltsvtlsWe..pP......ivgYr.
                      P + +    ++++ ++++       ++++We   P ++++ i + ++
   mKIAA0970   471    PAALKA---PKIEKINDH------ICEITWEylQPmkgdpvIYNLQv 508  

                   ..................ytltgLkPgaepwteYefrVrAvngndaGeg<
                    ++++++ ++  ++++++++ + L+ +     eY+frV A+         
   mKIAA0970   509 mvgkdsefkqiykgpdtsFRYSSLQLN----CEYRFRVCAIRQ--CQDP  551  

                   -*
                     
   mKIAA0970     -    -    

//