hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00610/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0970  ( 622 res)   mpg00610

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                    141.9    1.1e-38   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/5       1    74 [.     1    84 []     2.1     0.91
fn3        2/5      85   171 ..     1    84 []    43.7  4.1e-09
fn3        3/5     183   265 ..     1    84 []    42.2  1.1e-08
fn3        4/5     283   364 ..     1    84 []    33.6  4.4e-06
fn3        5/5     376   459 ..     1    84 []    20.2    0.017

Alignments of top-scoring domains:
fn3: domain 1 of 5, from 1 to 74: score 2.1, E = 0.91
                   *->PsaPtnltvtdvtstsltlsWsppt..gngpitgYevtyRqpkngge
                                   s  + ++W+pp+++g++pi +Y v+   + ++g 
   mKIAA0970     1    ------------HSHGFKITWDPPKdnGGAPINKYVVEM-AEGSNGN 34   

                   wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   +   + +gtt+++    L+Pg  Y +rV+ +++gG+++ S   
   mKIAA0970    35 KWDMIYSGTTREHLCDRLTPGCYYRLRVYCISDGGqSAVS    74   

fn3: domain 2 of 5, from 85 to 171: score 43.7, E = 4.1e-09
                   *->PsaP.tnltvtdv.tstsltlsWsppt..gngpitgYevtyRqpkng
                      P+ P   ++  +++ + +++l+W pp  +g++pi+ Y v+   p+++
   mKIAA0970    85    PPGPcLPPRLQGRpKAKEIQLRWGPPQvdGGSPISCYAVEM-TPADK 130  

                   ge.wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                    e+   ++ + ++  +t+  L Pg +Y++r++A n++G Gp+S   
   mKIAA0970   131 DEpRDVYQGSEVE--CTVGSLLPGKTYSFRLRAANRIGfGPFS    171  

fn3: domain 3 of 5, from 183 to 265: score 42.2, E = 1.1e-08
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew
                      P++ + ++vt +++t ++++W+ p +++ ++t Y++++   + +g+ 
   mKIAA0970   183    PDQCRPPQVTCRSATCAQVNWEIPLsNGTDVTEYRLEW-GGV-EGSM 227  

                   neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   +     +   s++l+gL P t+Y  rVqA + +G Gp+S   
   mKIAA0970   228 QMCYCGPGL-SCELKGLSPATTYYCRVQAMSVVGaGPFS    265  

fn3: domain 4 of 5, from 283 to 364: score 33.6, E = 4.4e-06
                   *->PsaPtnltvtdv...tstsltlsWsppt.gngpitgYevtyRqpkng
                      + + ++  ++  + + st l +sW+ p +++++i  Y++++  +k  
   mKIAA0970   283    LQEISDDDIEYPhysPSTCLAISWKEPYdHGSEILAYSIDL-GDK-- 326  

                   gewneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                      + ltv + t sy++  L+P+t+Y +r+qA+n  G Gp+S   
   mKIAA0970   327 ---QPLTVGKMT-SYIIDSLQPDTTYRIRIQALNSLGaGPFS    364  

fn3: domain 5 of 5, from 376 to 459: score 20.2, E = 0.017
                   *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg
                      P++P+   v   +  +l l W   t+++ + +   Y +   q+++ +
   mKIAA0970   376    PDPPRLECVAF-NHQNLKLKWGEGTpktLSTDAVQYHL---QMEDRN 418  

                   ewneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   + +     g+ ++y ++ L + t Y++++qA n++G+Gp S   
   mKIAA0970   419 GRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEAGeGPLS    459  

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