hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic02056/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0969  ( 1106 res)   mic02056

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PH         PH domain                                     86.0    7.7e-22   1
Extensin_2 Extensin-like region                        -140.1       0.52   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PH           1/1      97   215 ..     1    92 []    86.0  7.7e-22
Extensin_2   1/1     187   557 ..     1   385 []  -140.1     0.52

Alignments of top-scoring domains:
PH: domain 1 of 1, from 97 to 215: score 86.0, E = 7.7e-22
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL
                      v+k GwL+k+ ++g k+w kR+fvL +++L+yykd+k+++  gsipL
   mKIAA0969    97    VTKAGWLYKQAssGVKQWNKRWFVLVDRCLFYYKDEKqESILGSIPL 143  

                   sgiqvekvpdn...krkncFeirtdr.....................etl
                    + +v  v ++++  rk++F+++ ++ ++ + ++++  +++ ++ + +t+
   mKIAA0969   144 LSFRVAAVQPSdniSRKHTFKVTVHWvdeagassthclspqaehagvRTY 193  

                   llqaeseeerkeWvkaiqsair<-*
                   +++aes+ee + W++a  +a+r   
   mKIAA0969   194 FFSAESPEEQEAWIQAMGEAAR    215  

Extensin_2: domain 1 of 1, from 187 to 557: score -140.1, E = 0.52
                   *->lltlvvalvslslpseasakYs.......YsSPPPpekpYvYkSPPp
                       + +   ++s ++p e +a  +  ++  + + PP +      kS P 
   mKIAA0969   187    HAGVRTYFFSAESPEEQEAWIQamgeaarVQIPPAQ------KSVPQ 227  

                   PspkyvykSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpP....
                   P    v +S   p      +  PP    ++   PP+  + k  P  ++++
   mKIAA0969   228 P----VRHSLEKP----DSENIPPS---KHHQQPPHNNLTKLEPEAktrg 266  

                   .......kyvYkSPPpPv....ykYkSPPPPthsppPpyvykSPPPPpk.
                   ++++++ +   + P  P  +++   k    P+  p       SP P  ++
   mKIAA0969   267 egdgrgcEKAERRPERPEvkkeTLVKANGLPS-GPETASEPGSPYPDGPr 315  

                   kyvykSpPpptPvYkYkSPPPPpyvYkspPpPvkkripyvYkSPPPPpPY
                   ++     P  +  + Y+SP  P      + pP         +S PP +  
   mKIAA0969   316 VPGGGEHPAQPNGWQYSSPSRP---GSTAFPPHDGDSGGQRRSFPPRTD- 361  

                   vYkSpPppvkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvY
                     k + + +      s    ++     +  PPP+         ++  Y  
   mKIAA0969   362 PDKIAQRKS------SMNQLQQWVNLRRGVPPPE-----DLRSPSRFY-- 398  

                   kSPPPPkksYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpy
                      P P+++  +  p    Y S  p    y Y   PP  ++ s    + y
   mKIAA0969   399 ---PMPRRVPDYYNP----YSSQYP--DDYQYY--PPGVRPDSICSMPAY 437  

                   vYkSPPPPt............yvYkSpPpPyk...pptppkiyksPPPPt
                      SPP   ++++++ ++++++ Y+     + ++   + + ++   P   
   mKIAA0969   438 DRISPPWALedkrhsfrngggPTYQLHEWKEStsyGRQDGTVWIPSPSRQ 487  

                   PvyvYkspPpippik..sssppPvyvYkSpPppvysPPPPyvYssPPPPv
                   Pv++ +       +++ s  p    v +Sp   +ys     +Ys+   P 
   mKIAA0969   488 PVFYDELDAASGSLRrlSLQPRSHSVPRSPSQGSYSRA--RIYSPVRSPS 535  

                   yvynsaPvykksPPkhhYiYsSPPPphh<-*
                     ++  P      P+   iY+ P   ++   
   mKIAA0969   536 ARFDRLP------PRSEDIYADPAAYVM    557  

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