hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg13747/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0968  ( 487 res)   mbg13747

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    370.7   9.2e-107   1
TyrKc    Tyrosine kinase, catalytic domain               18.5    2.8e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1      22   280 ..     1   231 []   370.7 9.2e-107
TyrKc      1/1      22   280 ..     1   280 []    18.5  2.8e-12

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 22 to 280: score 370.7, E = 9.2e-107
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+l ++lGkGaF++V++++++  g+++A K+i++++ + +++++++r
   mKIAA0968    22    YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINtkklsardhQKLER 68   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E +i++  +HPNIV+L+d++ ++++ yl+++++ G  G+Lf+ ++ r + 
   mKIAA0968    69 EARICRLlKHPNIVRLHDSISEeGHHYLIFDLVTG--GELFEDIVAREY- 115  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.....h
                        +sE +a + ++Qil+a+ ++H++g++HRDLKPeN+LL s+ ++  
   mKIAA0968   116 -----YSEaDASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASklkgaA 160  

                   vKlaDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlG
                   vKlaDFGlA +++++++    f GTp Y++PEvl++++Ygk +vD W++G
   mKIAA0968   161 VKLADFGLAIEVegeqqawFGFAGTPGYLSPEVLrkdPYGK-PVDLWACG 209  

                   cilyElltGkpPFp..qldlifkkig..............SpeakdLikk
                   +ily+ll+G+pPF+++++++++++i+ + ++ +++++++ +peakdLi+k
   mKIAA0968   210 VILYILLVGYPPFWdeDQHRLYQQIKagaydfpspewdtvTPEAKDLINK 259  

                   lLvkdPekRlta.eaLedeldikaHPff<-*
                   +L+ +P+kR+ta eaL+       HP++   
   mKIAA0968   260 MLTINPSKRITAaEALK-------HPWI    280  

TyrKc: domain 1 of 1, from 22 to 280: score 18.5, E = 2.8e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       +l ++LG GaF +V++++    ++e A K ++  + + ++++ + r
   mKIAA0968    22    YQLFEELGKGAFSVVRRCVKVlagQEYAAKIINTKKlsardHQKLER 68   

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   Ea+i + l  kHpNiV+L+  ++ee       + +++++ ++ gG L + 
   mKIAA0968    69 EARICRLL--KHPNIVRLHDSISEE-------GHHYLIFDLVTGGELFED 109  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..
                   + +++   s +d  +   QI +   + +++++vHRDL   N L+++++++
   mKIAA0968   110 IVAREY-YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLkg 158  

                   .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                     vK +DFGL+ +++ +      +     +   g+ +      ++PE+l+
   mKIAA0968   159 aAVKLADFGLAIEVEGE-----QQAWFGFA---GTPG-----YLSPEVLR 195  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                   +  +    D W+ GV L+ i+  G +P ++      +  ++++++k+G +
   mKIAA0968   196 KDPYGKPVDLWACGVILY-ILLVGYPPFWD-----EDQHRLYQQIKAGAY 239  

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                     + ++       t ++e  dl+ +    +P++R t +e  ++  +   
   mKIAA0968   240 DFPSPE-----WDTVTPEAKDLINKMLTINPSKRITAAEAlkHPWI    280  

//