hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg13747/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0968  ( 487 res)   mbg13747

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       347.2   1.9e-100   1
Pkinase_Tyr Protein tyrosine kinase                      15.8    7.4e-13   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1      22   278 ..     1   272 []    15.8  7.4e-13
Pkinase       1/1      22   280 ..     1   287 []   347.2 1.9e-100

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 22 to 278: score 15.8, E = 7.4e-13
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei
                       +l ++LG+GaF +V++++        +++ A K+++ + + s ++ 
   mKIAA0968    22    YQLFEELGKGAFSVVRRCVKV----LAGQEYAAKIInTK-KLSARD- 62   

                   eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd
                    ++++ rEA+i + l +HpNiVrL+  +++ ++     +y+++ ++ gG 
   mKIAA0968    63 -HQKLEREARICRLL-KHPNIVRLHDSISE-EGH----HYLIFDLVTGGE 105  

                   LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV
                   L +   +   ++  + +d  +  +Qi ++  + +++++vHRDL   N L+
   mKIAA0968   106 LFEDIVA---REYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLL 152  

                   se...nlvVKIsDFGLaRdiynddyYvrkkgggk.lPvkWmAPEslkygk
                   +++ ++  VK +DFGLa  + + +   ++   g       ++PE+l+   
   mKIAA0968   153 ASklkGAAVKLADFGLAIEV-EGE---QQAWFGFaGTPGYLSPEVLRKDP 198  

                   FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPen
                   +    D W+ GV L+ ++  G +P +++ + +++++++    y  p Pe 
   mKIAA0968   199 YGKPVDLWACGVILYILLV-GYPP-FWDEDQHRLYQQIKAGAYDFPSPEW 246  

                   C..PdelYdlMlqCWaedPedRPtFselverL<-*
                    + ++e  dl+ +    +P++R t +e + +    
   mKIAA0968   247 DtvTPEAKDLINKMLTINPSKRITAAEALKHP    278  

Pkinase: domain 1 of 1, from 22 to 280: score 347.2, E = 1.9e-100
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y+l e lG+G+f++V++++++  g+++A Kii+ +k +   ++ + r
   mKIAA0968    22    YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLER 68   

                   rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse
                     E++i + L+HpNIvrl+d+  +++h yl+++++ gG    +Lf+ +  
   mKIAA0968    69 --EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGG----ELFEDIV- 111  

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv
                     ++  +  se +a +++ Qil+++ ++H++g++HRDLKPeN+Ll     
   mKIAA0968   112 --AREYY--SEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLA-SKL 156  

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                    +a +K+aDFGlA  + ++ ++   +f+GTp+Y++PEvl+   +yg++vD
   mKIAA0968   157 KGAAVKLADFGLAIEV-EgEQQaWFGFAGTPGYLSPEVLR-KDPYGKPVD 204  

                   vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi
                    W++Gvily+ll G+pPF++e     dq  l+++i+ + ++f+spewd +
   mKIAA0968   205 LWACGVILYILLVGYPPFWDE-----DQHRLYQQIKAGAYDFPSPEWDTV 249  

                   srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                               +eakdLi+k+L+ +PskR+ta+e+l+HPw+   
   mKIAA0968   250 T-----------PEAKDLINKMLTINPSKRITAAEALKHPWI    280  

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