hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02135/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0967  ( 1443 res)   mbh02135

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                            115.0    8.6e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1      71   295 ..     1   232 []   115.0  8.6e-30

Alignments of top-scoring domains:
B41: domain 1 of 1, from 71 to 295: score 115.0, E = 8.6e-30
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                       ++p+vlkVyl +g+t+ f+++ +tt+++++ tv +kl++  r+ ey
   mKIAA0967    71    LCMPNVLKVYLENGQTKAFKFEANTTVKDIILTVKEKLSI--RSIEY 115  

                   FgLqfedkded..shWldpaktilkqdvkspksepltlyFRvkFyppdwh
                   F+L++e   + ++ h l ++ ++  q+v++++s   +++FRv F p+d+ 
   mKIAA0967   116 FALALEEQYSIsrLHLL-HEEELVQQVVEREESQDSRCLFRVSFVPKDP- 163  

                   gppeqlkeDptrynllylQvrddilsGrlpcp.seeeallLAaLalqaef
                       +lkeDp+++++lylQ ++d+l++r+ ++ + + al+LAaL++q   
   mKIAA0967   164 --LDLLKEDPVAFEYLYLQSCSDVLQERFAVEmKCNSALRLAALHIQERI 211  

                   GdydpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewr
                     + ++++   +slk+++k+++ + f+ + ll+         +++ k+++
   mKIAA0967   212 YACAQPQK---ISLKYIEKDWGIENFISPTLLR---------NMKGKDIK 249  

                   erIvelhkeh.........aglspeeaklkYLelarrLpptYGvelF<-*
                   + I+   k+ ++  +++++   s +++ l+YL+++  L  tYG  +F   
   mKIAA0967   250 KAISFHMKRNqnlleprqkQLISAAQLRLNYLQILGELK-TYGGKVF    295  

//