hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02135/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0967  ( 1443 res)   mbh02135

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            21.5      0.019   1
Band_41  FERM domain (Band 4.1 family)                  -79.2       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1      73   161 ..     1    98 []    21.5    0.019
Band_41    1/1      77   295 ..     1   210 []   -79.2     0.12

Alignments of top-scoring domains:
RA: domain 1 of 1, from 73 to 161: score 21.5, E = 0.019
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                       + vl+Vy+e+g+   +k ++   ntT++++i ++ +K+ +  ++ e
   mKIAA0967    73    MPNVLKVYLENGQ---TKAFKFEANTTVKDIILTVKEKLSI--RSIE 114  

                   dyvLvEvslvlerggeer.rvLpddEkPlqiqlqlkrdaqvrsrFlLrrr
                   +++L     + e+    r   L++ E + q++++  ++++ r  F +   
   mKIAA0967   115 YFALA----LEEQYSISRlHLLHEEELVQQVVEREESQDS-RCLFRVSFV 159  

                   ed<-*
                   +    
   mKIAA0967   160 PK    161  

Band_41: domain 1 of 1, from 77 to 295: score -79.2, E = 0.12
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                       +v l+ +   +Fk e +++ ++    V++ L +r  +YF L++   
   mKIAA0967    77    LKVYLENGQTKAFKFEANTTVKDIILTVKEKLSIRSIEYFALALEEQ 123  

                   DnsskdsptWLdpsKkirkQdvkkee..PytLhFRvKFYpeDvpneLr..
                         s   L +  ++  Q v +ee++    +FRv F p D p +L ++
   mKIAA0967   124 ---YSISRLHLLHEEELVQQVVEREEsqDSRCLFRVSFVPKD-PLDLLke 169  

                   qeiTrylffLQvkqdIleGrlpCpf..etAvLLASYaVQsefGDYn.esl
                   +++   +++LQ   d l +r  +  + ++A  LA   +Q     Y   + 
   mKIAA0967   170 DPVAFEYLYLQSCSDVLQERFAVEMkcNSALRLAALHIQERI--YAcAQP 217  

                   HkaGRtCLCYLsd....ekll.PqRVlnqkqltkddfEekIaelHkeH..
                    k +   L Y   + + e +++P        l + +  + I ++   H +
   mKIAA0967   218 QKIS---LKYIEKdwgiENFIsP-------TLLRNMKGKDIKKAISFHmk 257  

                   ........rGmspdeA...eleYLkiArdLemYGVdff<-*
                   ++++  ++r+   ++A +  l+YL i   L++YG  +f   
   mKIAA0967   258 rnqnllepRQKQLISAaqlRLNYLQILGELKTYGGKVF    295  

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