hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0966  ( 1169 res)   mpm04106

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Syja_N   SacI homology domain                           223.0    4.4e-63   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Syja_N     1/1      85   459 ..     1   366 []   223.0  4.4e-63

Alignments of top-scoring domains:
Syja_N: domain 1 of 1, from 85 to 459: score 223.0, E = 4.4e-63
                   *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi
                      + G++G I L ++      Li+I  k  VG+ + +h++ k+t++ ++
   mKIAA0966    85    VEGVIGKIQLHSD--LPWWLILIRQKALVGKLPGDHEVCKVTKIAVL 129  

                   slnndsvdetdiekkDEarylkihPdgisTdt..................
                   sl +   +e       E+++ k h      + + +++++  +++++++  
   mKIAA0966   130 SLSEMEPQEL------ELELCKKH------HFginkpekiipspddskfl 167  

                   ........................qeklpkhPcslLkkvLstg.tFYFSy
                    ++ ++ +++ + +++++ +++++ ekl      +L k + ++++FY+S 
   mKIAA0966   168 lktftniksnvsapnkkkvkeskeKEKLERRLLEELLKMFMDSeSFYYSL 217  

                   tyDltntLQrnskvlraplenlessvdradesifdiITdynerFvWNsfL
                   tyDltn++Qr s+    +++ +++ +   d            rF+WN ++
   mKIAA0966   218 TYDLTNSVQRQST----GERDGRPLWQKVDD-----------RFFWNKYM 252  

                   leelinfRshLdneekqqlnverFllpvIhGfikqaslyvn.........
                    + l          e   ++v+ +++p+I+Gf+++++l+vn ++++++++
   mKIAA0966   253 IQALT---------EIGTPDVDFWIIPIIQGFVQIEELVVNynessdddk 293  

                   ................gktisltLISRRStkRAGTRFlkRGvnddGhVAN
                   +++++++++++  ++ + ++ ++LISRRS++RAG R+ +RGv+++G+VAN
   mKIAA0966   294 sspetppqdstcvddiHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVAN 343  

                   FVETEQIVydsdsksekarysSFVQvRGSIPLFWeQdvegsnLsyKPliv
                   +VETEQ +++   +       SF+Q+RGS+P+FW+Q    +  +y P+++
   mKIAA0966   344 YVETEQLIHVHHHTL------SFIQTRGSVPVFWSQ----VGYRYNPRPR 383  

                   lrsve.atapafdrHFddlkqrYGnpivIvNLiktkkekEkplsklyeef
                   l+++e++t + f  HF+++ ++Y  ++vIvNL+++  ++Ek ++ +y ++
   mKIAA0966   384 LDKSEkETVDCFCAHFEEQLKIYK-KQVIVNLVDQ-AGREKIIGDAYLKQ 431  

                   lkaseylnsflpeeekirytsFDFHkeckqmnmswdrl<-*
                   +   +++        k+ y+sFDFH  c++m  +++++   
   mKIAA0966   432 VLLFNNP--------KLTYVSFDFHEHCRGM--KFENV    459  

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